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| Mutant Information |
|---|
| Mutant Name | FN907-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN907-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 19706006 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 29282844 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 13510886 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 20179677 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 19431156 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3864086 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6572341 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 18605770 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 18605772 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 20825455 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 2993183 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 3610602 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g050300 |
| SBS | Chr6 | 12188016 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 15294540 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25889533 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 27316885 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 5694740 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr9 | 9818096 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 21513123 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 10988746 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17926795 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 29607436 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g244200 |
| SBS | Chr12 | 2959981 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 10696907 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11521978 | A-T | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 6772922 | 6772927 | 5 | OsKitaake01g085600 |
| Deletion | Chr2 | 7307952 | 7307953 | 1 | |
| Deletion | Chr10 | 8231966 | 8231968 | 2 | |
| Deletion | Chr10 | 8661300 | 8661305 | 5 | |
| Deletion | Chr10 | 10606822 | 10606824 | 2 | |
| Deletion | Chr11 | 10795432 | 10795434 | 2 | |
| Deletion | Chr12 | 12463494 | 12463500 | 6 | |
| Deletion | Chr9 | 15066518 | 15066519 | 1 | |
| Deletion | Chr6 | 15750974 | 15750975 | 1 | |
| Deletion | Chr10 | 18204741 | 18204742 | 1 | |
| Deletion | Chr1 | 20003023 | 20003027 | 4 | |
| Deletion | Chr2 | 21196780 | 21196784 | 4 | |
| Deletion | Chr2 | 21316427 | 21316439 | 12 | OsKitaake02g205600 |
| Deletion | Chr5 | 23268781 | 23268783 | 2 | |
| Deletion | Chr1 | 27080803 | 27080913 | 110 | |
| Deletion | Chr4 | 33028229 | 33028236 | 7 | |
| Deletion | Chr2 | 36718775 | 36718781 | 6 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 20847101 | 20847104 | 2 | |
| Insertion | Chr3 | 25610951 | 25610954 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 19336906 | 19673541 | 2 |
Translocations: 7
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 10151643 | Chr5 | 1989604 | |
| Translocation | Chr12 | 10152346 | Chr5 | 1989592 | |
| Translocation | Chr9 | 11423180 | Chr7 | 19337176 | OsKitaake07g156700 |
| Translocation | Chr9 | 11424175 | Chr7 | 19699772 | OsKitaake07g160900 |
| Translocation | Chr10 | 13260838 | Chr4 | 9728838 | |
| Translocation | Chr9 | 18211430 | Chr7 | 19673549 | OsKitaake07g160500 |
| Translocation | Chr9 | 18211436 | Chr7 | 19699763 | OsKitaake07g160900 |