Search Kitaake

Mutant Information

Mutant Name	FN909-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN909-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6393143 A-T Hetero INTRON
SBS Chr1 7672379 T-C Hetero UTR_5_PRIME
SBS Chr1 7959970 T-C Hetero INTERGENIC
SBS Chr1 8337325 T-A Hetero INTERGENIC
SBS Chr1 16750766 G-A Homo INTERGENIC
SBS Chr1 17778534 T-G Homo INTERGENIC
SBS Chr1 40317336 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g437700
SBS Chr1 41725726 C-A Hetero SYNONYMOUS_CODING
SBS Chr2 6076221 G-A Hetero INTERGENIC
SBS Chr2 6772100 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g092300
SBS Chr2 35633155 C-G Homo INTRON
SBS Chr3 8155308 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 15952527 T-A Homo INTERGENIC
SBS Chr3 28031467 T-A Hetero INTERGENIC
SBS Chr3 28190106 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g291400
SBS Chr3 29034533 C-T Hetero INTERGENIC
SBS Chr4 22967149 G-A Homo UTR_3_PRIME
SBS Chr5 13256765 C-T Homo INTERGENIC
SBS Chr6 7205418 C-T Hetero INTERGENIC
SBS Chr6 12494724 G-A Homo INTERGENIC
SBS Chr6 22418451 C-T Homo INTERGENIC
SBS Chr6 22418454 T-G Homo INTERGENIC
SBS Chr6 22418455 T-A Homo INTERGENIC
SBS Chr6 22418456 C-A Homo INTERGENIC
SBS Chr6 29209031 T-C Homo INTERGENIC
SBS Chr7 17445996 G-A Homo INTERGENIC
SBS Chr8 15737656 C-T Hetero INTERGENIC
SBS Chr8 16217897 G-A Hetero INTERGENIC
SBS Chr8 19592852 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 22809862 G-A Hetero INTERGENIC
SBS Chr8 29012040 C-T Hetero INTERGENIC
SBS Chr10 6290610 G-A Hetero UTR_3_PRIME
SBS Chr10 8803856 G-C Hetero INTERGENIC
SBS Chr10 16358773 T-C Hetero INTRON
SBS Chr11 6309231 G-A Hetero INTERGENIC
SBS Chr11 18060557 C-T Hetero INTERGENIC
SBS Chr11 18060558 C-T Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 7105 7456 351
Deletion Chr2 1184305 1184306 1
Deletion Chr8 3115231 3115235 4 OsKitaake08g035100
Deletion Chr3 5359906 5359917 11
Deletion Chr6 6070918 6070919 1
Deletion Chr3 7484836 7484837 1 OsKitaake03g104000
Deletion Chr2 8207915 8207923 8
Deletion Chr3 8292874 8292876 2
Deletion Chr10 8421671 8421673 2
Deletion Chr5 9307814 9307838 24
Deletion Chr9 10418566 10418568 2
Deletion Chr1 11562268 11562277 9
Deletion Chr10 16158889 16158891 2 OsKitaake10g108100
Deletion Chr4 16657553 16657562 9
Deletion Chr8 16812001 16936000 123999 7
Deletion Chr2 17371410 17371416 6
Deletion Chr1 18167150 18167162 12
Deletion Chr8 18726001 18804000 77999 8
Deletion Chr3 19440052 19440054 2
Deletion Chr9 19791600 19791604 4
Deletion Chr3 20634453 20634472 19
Deletion Chr3 22480460 22480464 4
Deletion Chr6 24553916 24553919 3 OsKitaake06g217500
Deletion Chr12 26886002 26886004 2
Deletion Chr8 28202694 28202696 2 OsKitaake08g237500
Deletion Chr1 28203614 28203615 1
Deletion Chr1 39278043 39278049 6
Deletion Chr1 42839447 42839457 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24602667 24602670 2
Insertion Chr3 18234954 18234962 7
Insertion Chr4 22073080 22073083 2
Insertion Chr11 5879372 5879375 2
Insertion Chr3 6885482 6885485 2 OsKitaake03g097400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 7048078 Chr4 8215817 OsKitaake04g042800
Translocation Chr12 17483655 Chr4 17163257

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6393143	A-T	Hetero	INTRON
SBS	Chr1	7672379	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	7959970	T-C	Hetero	INTERGENIC
SBS	Chr1	8337325	T-A	Hetero	INTERGENIC
SBS	Chr1	16750766	G-A	Homo	INTERGENIC
SBS	Chr1	17778534	T-G	Homo	INTERGENIC
SBS	Chr1	40317336	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g437700
SBS	Chr1	41725726	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	6076221	G-A	Hetero	INTERGENIC
SBS	Chr2	6772100	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g092300
SBS	Chr2	35633155	C-G	Homo	INTRON
SBS	Chr3	8155308	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	15952527	T-A	Homo	INTERGENIC
SBS	Chr3	28031467	T-A	Hetero	INTERGENIC
SBS	Chr3	28190106	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g291400
SBS	Chr3	29034533	C-T	Hetero	INTERGENIC
SBS	Chr4	22967149	G-A	Homo	UTR_3_PRIME
SBS	Chr5	13256765	C-T	Homo	INTERGENIC
SBS	Chr6	7205418	C-T	Hetero	INTERGENIC
SBS	Chr6	12494724	G-A	Homo	INTERGENIC
SBS	Chr6	22418451	C-T	Homo	INTERGENIC
SBS	Chr6	22418454	T-G	Homo	INTERGENIC
SBS	Chr6	22418455	T-A	Homo	INTERGENIC
SBS	Chr6	22418456	C-A	Homo	INTERGENIC
SBS	Chr6	29209031	T-C	Homo	INTERGENIC
SBS	Chr7	17445996	G-A	Homo	INTERGENIC
SBS	Chr8	15737656	C-T	Hetero	INTERGENIC
SBS	Chr8	16217897	G-A	Hetero	INTERGENIC
SBS	Chr8	19592852	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	22809862	G-A	Hetero	INTERGENIC
SBS	Chr8	29012040	C-T	Hetero	INTERGENIC
SBS	Chr10	6290610	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	8803856	G-C	Hetero	INTERGENIC
SBS	Chr10	16358773	T-C	Hetero	INTRON
SBS	Chr11	6309231	G-A	Hetero	INTERGENIC
SBS	Chr11	18060557	C-T	Hetero	INTERGENIC
SBS	Chr11	18060558	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	7105	7456	351
Deletion	Chr2	1184305	1184306	1
Deletion	Chr8	3115231	3115235	4	OsKitaake08g035100
Deletion	Chr3	5359906	5359917	11
Deletion	Chr6	6070918	6070919	1
Deletion	Chr3	7484836	7484837	1	OsKitaake03g104000
Deletion	Chr2	8207915	8207923	8
Deletion	Chr3	8292874	8292876	2
Deletion	Chr10	8421671	8421673	2
Deletion	Chr5	9307814	9307838	24
Deletion	Chr9	10418566	10418568	2
Deletion	Chr1	11562268	11562277	9
Deletion	Chr10	16158889	16158891	2	OsKitaake10g108100
Deletion	Chr4	16657553	16657562	9
Deletion	Chr8	16812001	16936000	123999	7
Deletion	Chr2	17371410	17371416	6
Deletion	Chr1	18167150	18167162	12
Deletion	Chr8	18726001	18804000	77999	8
Deletion	Chr3	19440052	19440054	2
Deletion	Chr9	19791600	19791604	4
Deletion	Chr3	20634453	20634472	19
Deletion	Chr3	22480460	22480464	4
Deletion	Chr6	24553916	24553919	3	OsKitaake06g217500
Deletion	Chr12	26886002	26886004	2
Deletion	Chr8	28202694	28202696	2	OsKitaake08g237500
Deletion	Chr1	28203614	28203615	1
Deletion	Chr1	39278043	39278049	6
Deletion	Chr1	42839447	42839457	10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	7048078	Chr4	8215817	OsKitaake04g042800
Translocation	Chr12	17483655	Chr4	17163257

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes