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Mutant Information

Mutant Name	FN910-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN910-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3713600 T-G Hetero INTRON
SBS Chr1 24935853 C-T Homo INTERGENIC
SBS Chr1 25484485 G-A Hetero UTR_3_PRIME
SBS Chr1 27906817 T-C Hetero INTERGENIC
SBS Chr1 27945045 T-A Hetero INTERGENIC
SBS Chr1 37849142 G-A Hetero INTERGENIC
SBS Chr2 3834254 C-T Hetero INTERGENIC
SBS Chr2 13014206 T-C Homo INTERGENIC
SBS Chr3 3136117 A-G Hetero INTERGENIC
SBS Chr3 5855969 A-T Hetero INTRON
SBS Chr3 9919296 C-T Homo INTRON
SBS Chr3 15966948 G-A Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr4 24043809 C-A Hetero INTERGENIC
SBS Chr4 24417346 A-C Homo INTERGENIC
SBS Chr4 28700640 G-A Homo INTERGENIC
SBS Chr5 12814724 G-A Homo INTERGENIC
SBS Chr5 13430321 A-T Homo INTRON
SBS Chr5 18692749 C-T Hetero INTERGENIC
SBS Chr5 19985360 A-T Hetero INTERGENIC
SBS Chr5 24417668 C-T Hetero UTR_5_PRIME
SBS Chr6 5207971 A-G Hetero INTERGENIC
SBS Chr6 24924571 G-A Hetero INTERGENIC
SBS Chr7 1691710 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g023800
SBS Chr7 8476191 A-G Hetero SYNONYMOUS_CODING
SBS Chr7 8827201 A-C Hetero INTERGENIC
SBS Chr7 26802485 G-A Hetero INTERGENIC
SBS Chr8 3748478 G-C Homo INTERGENIC
SBS Chr8 25667308 A-T Homo INTERGENIC
SBS Chr9 3907507 C-T Homo INTERGENIC
SBS Chr9 7182063 A-T Homo INTERGENIC
SBS Chr9 10081085 A-G Homo INTERGENIC
SBS Chr10 1246434 T-A Homo INTRON
SBS Chr10 11636816 C-T Homo INTERGENIC
SBS Chr10 22924208 G-T Hetero INTRON
SBS Chr11 15880653 C-G Hetero INTERGENIC
SBS Chr11 24864662 T-A Homo INTERGENIC
SBS Chr12 19442414 A-C Hetero INTRON
SBS Chr12 22377952 C-T Hetero INTERGENIC

Deletions: 33

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2436074 2436076 2
Deletion Chr4 2929031 2929034 3
Deletion Chr9 4065292 4065293 1
Deletion Chr12 4888895 4888901 6
Deletion Chr3 5376922 5376931 9 OsKitaake03g076000
Deletion Chr3 6156240 6156258 18 OsKitaake03g088200
Deletion Chr7 6694336 6694345 9
Deletion Chr7 6789973 6789979 6
Deletion Chr6 6806101 6806103 2
Deletion Chr10 8179588 8179590 2
Deletion Chr4 8835764 8835765 1
Deletion Chr1 9142911 9142929 18
Deletion Chr12 9150954 9150964 10
Deletion Chr3 9870937 9870941 4
Deletion Chr1 11578694 11578711 17
Deletion Chr9 11655601 11655603 2
Deletion Chr8 12047572 12047575 3
Deletion Chr6 14300613 14300640 27
Deletion Chr8 15503430 15503441 11
Deletion Chr11 15842001 15883000 40999 3
Deletion Chr3 18326145 18326152 7
Deletion Chr9 18698304 18698317 13
Deletion Chr4 20442313 20442317 4
Deletion Chr5 20690776 20690789 13
Deletion Chr5 22046498 22046514 16
Deletion Chr4 22975483 22975493 10
Deletion Chr7 23920314 23920326 12
Deletion Chr7 28343847 28343855 8 OsKitaake07g268500
Deletion Chr1 29289551 29289558 7
Deletion Chr4 29631546 29631551 5
Deletion Chr4 33210832 33210833 1
Deletion Chr1 33851022 33851059 37
Deletion Chr1 37033822 37033850 28

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 14475430 14475433 2
Insertion Chr6 20553534 20553537 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 15845132 16122568 2
Inversion Chr11 15878471 16122585 OsKitaake11g128950

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13132408 Chr2 31515886

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3713600	T-G	Hetero	INTRON
SBS	Chr1	24935853	C-T	Homo	INTERGENIC
SBS	Chr1	25484485	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	27906817	T-C	Hetero	INTERGENIC
SBS	Chr1	27945045	T-A	Hetero	INTERGENIC
SBS	Chr1	37849142	G-A	Hetero	INTERGENIC
SBS	Chr2	3834254	C-T	Hetero	INTERGENIC
SBS	Chr2	13014206	T-C	Homo	INTERGENIC
SBS	Chr3	3136117	A-G	Hetero	INTERGENIC
SBS	Chr3	5855969	A-T	Hetero	INTRON
SBS	Chr3	9919296	C-T	Homo	INTRON
SBS	Chr3	15966948	G-A	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr4	24043809	C-A	Hetero	INTERGENIC
SBS	Chr4	24417346	A-C	Homo	INTERGENIC
SBS	Chr4	28700640	G-A	Homo	INTERGENIC
SBS	Chr5	12814724	G-A	Homo	INTERGENIC
SBS	Chr5	13430321	A-T	Homo	INTRON
SBS	Chr5	18692749	C-T	Hetero	INTERGENIC
SBS	Chr5	19985360	A-T	Hetero	INTERGENIC
SBS	Chr5	24417668	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	5207971	A-G	Hetero	INTERGENIC
SBS	Chr6	24924571	G-A	Hetero	INTERGENIC
SBS	Chr7	1691710	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g023800
SBS	Chr7	8476191	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	8827201	A-C	Hetero	INTERGENIC
SBS	Chr7	26802485	G-A	Hetero	INTERGENIC
SBS	Chr8	3748478	G-C	Homo	INTERGENIC
SBS	Chr8	25667308	A-T	Homo	INTERGENIC
SBS	Chr9	3907507	C-T	Homo	INTERGENIC
SBS	Chr9	7182063	A-T	Homo	INTERGENIC
SBS	Chr9	10081085	A-G	Homo	INTERGENIC
SBS	Chr10	1246434	T-A	Homo	INTRON
SBS	Chr10	11636816	C-T	Homo	INTERGENIC
SBS	Chr10	22924208	G-T	Hetero	INTRON
SBS	Chr11	15880653	C-G	Hetero	INTERGENIC
SBS	Chr11	24864662	T-A	Homo	INTERGENIC
SBS	Chr12	19442414	A-C	Hetero	INTRON
SBS	Chr12	22377952	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2436074	2436076	2
Deletion	Chr4	2929031	2929034	3
Deletion	Chr9	4065292	4065293	1
Deletion	Chr12	4888895	4888901	6
Deletion	Chr3	5376922	5376931	9	OsKitaake03g076000
Deletion	Chr3	6156240	6156258	18	OsKitaake03g088200
Deletion	Chr7	6694336	6694345	9
Deletion	Chr7	6789973	6789979	6
Deletion	Chr6	6806101	6806103	2
Deletion	Chr10	8179588	8179590	2
Deletion	Chr4	8835764	8835765	1
Deletion	Chr1	9142911	9142929	18
Deletion	Chr12	9150954	9150964	10
Deletion	Chr3	9870937	9870941	4
Deletion	Chr1	11578694	11578711	17
Deletion	Chr9	11655601	11655603	2
Deletion	Chr8	12047572	12047575	3
Deletion	Chr6	14300613	14300640	27
Deletion	Chr8	15503430	15503441	11
Deletion	Chr11	15842001	15883000	40999	3
Deletion	Chr3	18326145	18326152	7
Deletion	Chr9	18698304	18698317	13
Deletion	Chr4	20442313	20442317	4
Deletion	Chr5	20690776	20690789	13
Deletion	Chr5	22046498	22046514	16
Deletion	Chr4	22975483	22975493	10
Deletion	Chr7	23920314	23920326	12
Deletion	Chr7	28343847	28343855	8	OsKitaake07g268500
Deletion	Chr1	29289551	29289558	7
Deletion	Chr4	29631546	29631551	5
Deletion	Chr4	33210832	33210833	1
Deletion	Chr1	33851022	33851059	37
Deletion	Chr1	37033822	37033850	28

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	15845132	16122568	2
Inversion	Chr11	15878471	16122585	OsKitaake11g128950

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes