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Mutant Information

Mutant Name	FN911-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN911-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20743569 C-T Hetero INTERGENIC
SBS Chr1 29766904 A-G Hetero INTRON
SBS Chr1 32729511 C-T Homo INTERGENIC
SBS Chr2 17071840 A-T Hetero INTERGENIC
SBS Chr3 11516897 C-T Hetero INTERGENIC
SBS Chr3 12402014 G-T Hetero INTRON
SBS Chr3 17350321 T-G Hetero INTERGENIC
SBS Chr3 23434292 G-A Homo INTERGENIC
SBS Chr4 3375609 G-A Hetero INTERGENIC
SBS Chr4 6051285 C-T Hetero INTERGENIC
SBS Chr4 7348245 T-A Hetero INTERGENIC
SBS Chr4 7348250 G-A Hetero INTERGENIC
SBS Chr4 8027208 T-G Hetero UTR_3_PRIME
SBS Chr4 8655953 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g044100
SBS Chr4 17817393 T-C Hetero INTERGENIC
SBS Chr5 9891910 G-A Hetero INTERGENIC
SBS Chr5 16365541 C-G Hetero INTERGENIC
SBS Chr5 19178152 C-T Hetero INTRON
SBS Chr5 19943459 T-C Hetero INTERGENIC
SBS Chr5 30166877 T-A Hetero INTERGENIC
SBS Chr6 6330903 G-A Hetero INTERGENIC
SBS Chr6 6330904 C-T Hetero INTERGENIC
SBS Chr6 8226343 T-A Hetero UTR_3_PRIME
SBS Chr6 8397891 A-G Hetero INTERGENIC
SBS Chr6 25005119 G-C Hetero INTERGENIC
SBS Chr6 25299244 C-A Hetero INTRON
SBS Chr6 25577808 C-T Hetero INTERGENIC
SBS Chr6 25577809 G-T Hetero INTERGENIC
SBS Chr7 8492598 G-A Homo INTERGENIC
SBS Chr7 21826501 T-A Homo INTERGENIC
SBS Chr8 1001157 C-T Homo INTERGENIC
SBS Chr8 20413750 C-T Homo INTERGENIC
SBS Chr8 21943502 T-C Hetero INTERGENIC
SBS Chr9 4001072 C-T Homo INTERGENIC
SBS Chr10 4102010 G-A Homo INTERGENIC
SBS Chr10 10634108 G-A Hetero INTERGENIC
SBS Chr10 12474134 A-T Hetero INTERGENIC
SBS Chr10 15476873 A-G Hetero INTRON
SBS Chr11 23264544 G-T Homo INTERGENIC
SBS Chr11 24506125 C-T Homo INTERGENIC
SBS Chr12 11331437 G-T Hetero INTERGENIC
SBS Chr12 16645364 T-C Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2429329 2429331 2
Deletion Chr6 6444412 6444426 14
Deletion Chr5 8298222 8298224 2
Deletion Chr8 10683908 10683912 4
Deletion Chr1 11048027 11048035 8
Deletion Chr10 11530326 11530327 1
Deletion Chr10 12109681 12109684 3
Deletion Chr7 16335055 16335068 13
Deletion Chr1 16567518 16567523 5
Deletion Chr3 17358936 17359015 79
Deletion Chr4 17833001 17985000 151999 11
Deletion Chr1 18316680 18316682 2
Deletion Chr11 18778352 18778364 12
Deletion Chr2 20031790 20031797 7 OsKitaake02g195200
Deletion Chr4 21479030 21479034 4
Deletion Chr2 22534950 22534958 8
Deletion Chr2 22927259 22927262 3
Deletion Chr10 23215716 23215722 6
Deletion Chr11 23356001 23433000 76999 9
Deletion Chr10 23361014 23361039 25
Deletion Chr5 26838456 26838457 1 OsKitaake05g239800
Deletion Chr4 28183454 28183468 14

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 29388298 29388301 2
Insertion Chr4 35283682 35283685 2
Insertion Chr11 12457686 12457740 53

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 28840124 28873075 2
Inversion Chr5 28840138 28873074 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8592594 Chr1 37198237
Translocation Chr10 8592691 Chr1 37198195
Translocation Chr10 8627778 Chr5 15033387
Translocation Chr10 13129783 Chr4 9662355

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20743569	C-T	Hetero	INTERGENIC
SBS	Chr1	29766904	A-G	Hetero	INTRON
SBS	Chr1	32729511	C-T	Homo	INTERGENIC
SBS	Chr2	17071840	A-T	Hetero	INTERGENIC
SBS	Chr3	11516897	C-T	Hetero	INTERGENIC
SBS	Chr3	12402014	G-T	Hetero	INTRON
SBS	Chr3	17350321	T-G	Hetero	INTERGENIC
SBS	Chr3	23434292	G-A	Homo	INTERGENIC
SBS	Chr4	3375609	G-A	Hetero	INTERGENIC
SBS	Chr4	6051285	C-T	Hetero	INTERGENIC
SBS	Chr4	7348245	T-A	Hetero	INTERGENIC
SBS	Chr4	7348250	G-A	Hetero	INTERGENIC
SBS	Chr4	8027208	T-G	Hetero	UTR_3_PRIME
SBS	Chr4	8655953	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g044100
SBS	Chr4	17817393	T-C	Hetero	INTERGENIC
SBS	Chr5	9891910	G-A	Hetero	INTERGENIC
SBS	Chr5	16365541	C-G	Hetero	INTERGENIC
SBS	Chr5	19178152	C-T	Hetero	INTRON
SBS	Chr5	19943459	T-C	Hetero	INTERGENIC
SBS	Chr5	30166877	T-A	Hetero	INTERGENIC
SBS	Chr6	6330903	G-A	Hetero	INTERGENIC
SBS	Chr6	6330904	C-T	Hetero	INTERGENIC
SBS	Chr6	8226343	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	8397891	A-G	Hetero	INTERGENIC
SBS	Chr6	25005119	G-C	Hetero	INTERGENIC
SBS	Chr6	25299244	C-A	Hetero	INTRON
SBS	Chr6	25577808	C-T	Hetero	INTERGENIC
SBS	Chr6	25577809	G-T	Hetero	INTERGENIC
SBS	Chr7	8492598	G-A	Homo	INTERGENIC
SBS	Chr7	21826501	T-A	Homo	INTERGENIC
SBS	Chr8	1001157	C-T	Homo	INTERGENIC
SBS	Chr8	20413750	C-T	Homo	INTERGENIC
SBS	Chr8	21943502	T-C	Hetero	INTERGENIC
SBS	Chr9	4001072	C-T	Homo	INTERGENIC
SBS	Chr10	4102010	G-A	Homo	INTERGENIC
SBS	Chr10	10634108	G-A	Hetero	INTERGENIC
SBS	Chr10	12474134	A-T	Hetero	INTERGENIC
SBS	Chr10	15476873	A-G	Hetero	INTRON
SBS	Chr11	23264544	G-T	Homo	INTERGENIC
SBS	Chr11	24506125	C-T	Homo	INTERGENIC
SBS	Chr12	11331437	G-T	Hetero	INTERGENIC
SBS	Chr12	16645364	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2429329	2429331	2
Deletion	Chr6	6444412	6444426	14
Deletion	Chr5	8298222	8298224	2
Deletion	Chr8	10683908	10683912	4
Deletion	Chr1	11048027	11048035	8
Deletion	Chr10	11530326	11530327	1
Deletion	Chr10	12109681	12109684	3
Deletion	Chr7	16335055	16335068	13
Deletion	Chr1	16567518	16567523	5
Deletion	Chr3	17358936	17359015	79
Deletion	Chr4	17833001	17985000	151999	11
Deletion	Chr1	18316680	18316682	2
Deletion	Chr11	18778352	18778364	12
Deletion	Chr2	20031790	20031797	7	OsKitaake02g195200
Deletion	Chr4	21479030	21479034	4
Deletion	Chr2	22534950	22534958	8
Deletion	Chr2	22927259	22927262	3
Deletion	Chr10	23215716	23215722	6
Deletion	Chr11	23356001	23433000	76999	9
Deletion	Chr10	23361014	23361039	25
Deletion	Chr5	26838456	26838457	1	OsKitaake05g239800
Deletion	Chr4	28183454	28183468	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	28840124	28873075	2
Inversion	Chr5	28840138	28873074	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes