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Mutant Information

Mutant Name	FN912-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN912-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11246900 G-A Hetero INTRON
SBS Chr1 13532808 C-A Hetero INTRON
SBS Chr1 13532810 T-A Hetero INTRON
SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr2 13467100 C-T Homo INTERGENIC
SBS Chr2 21257770 A-T Hetero INTERGENIC
SBS Chr3 2910320 C-A Hetero INTRON
SBS Chr3 11256369 A-C Hetero INTERGENIC
SBS Chr3 19115029 C-T Hetero INTERGENIC
SBS Chr3 21985726 A-G Hetero INTERGENIC
SBS Chr3 23511412 C-A Hetero INTERGENIC
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr4 8333595 C-G Homo INTERGENIC
SBS Chr4 8554221 G-A Hetero INTERGENIC
SBS Chr4 13530568 A-G Homo INTERGENIC
SBS Chr4 14465297 T-G Homo INTERGENIC
SBS Chr4 32969829 T-C Homo INTERGENIC
SBS Chr5 7164233 G-T Hetero INTERGENIC
SBS Chr5 7164234 T-G Hetero INTERGENIC
SBS Chr6 354474 C-T Hetero INTERGENIC
SBS Chr6 12179311 G-T Hetero INTERGENIC
SBS Chr6 22133886 A-C Hetero INTERGENIC
SBS Chr6 22156618 A-G Hetero INTERGENIC
SBS Chr7 15577991 A-T Hetero INTERGENIC
SBS Chr7 27605513 A-T Hetero INTERGENIC
SBS Chr8 5591137 C-T Hetero INTERGENIC
SBS Chr8 19434270 A-G Hetero INTERGENIC
SBS Chr9 9001330 T-A Hetero INTERGENIC
SBS Chr9 18105916 A-T Homo INTERGENIC
SBS Chr10 2386672 C-T Hetero INTERGENIC
SBS Chr10 3728335 G-A Hetero INTRON
SBS Chr10 13155340 C-T Hetero INTERGENIC
SBS Chr10 16450371 C-A Hetero SYNONYMOUS_CODING
SBS Chr11 7624368 G-T Homo INTERGENIC
SBS Chr12 3040570 C-T Hetero INTERGENIC
SBS Chr12 10433076 G-A Hetero INTERGENIC
SBS Chr12 11522770 G-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 157816 157826 10 OsKitaake05g001600
Deletion Chr7 167783 167789 6
Deletion Chr4 816499 816504 5 OsKitaake04g006200
Deletion Chr2 1754734 1754736 2
Deletion Chr8 7274001 7322000 47999 OsKitaake08g069800
Deletion Chr12 8530232 8530233 1
Deletion Chr10 8669078 8669739 661
Deletion Chr1 8923032 8923036 4 OsKitaake01g111500
Deletion Chr3 9879822 9879823 1
Deletion Chr10 13372563 13372571 8
Deletion Chr9 15127700 15127708 8
Deletion Chr4 18311480 18311486 6
Deletion Chr3 19333272 19333276 4
Deletion Chr12 20243334 20243336 2
Deletion Chr3 22414323 22414328 5
Deletion Chr2 24087130 24087135 5
Deletion Chr4 32624880 32624892 12
Deletion Chr4 32644491 32644514 23

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24761923 24761926 2
Insertion Chr2 29381079 29381081 1
Insertion Chr6 23516883 23516888 4
Insertion Chr6 27159804 27159815 10
Insertion Chr11 2657466 2657468 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 18954004 19134983
Inversion Chr5 18954011 19134988
Inversion Chr1 21931964 22727767
Inversion Chr1 21931974 22727775

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 17196108 Chr3 23907945
Translocation Chr5 17196122 Chr3 23907556

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11246900	G-A	Hetero	INTRON
SBS	Chr1	13532808	C-A	Hetero	INTRON
SBS	Chr1	13532810	T-A	Hetero	INTRON
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr2	13467100	C-T	Homo	INTERGENIC
SBS	Chr2	21257770	A-T	Hetero	INTERGENIC
SBS	Chr3	2910320	C-A	Hetero	INTRON
SBS	Chr3	11256369	A-C	Hetero	INTERGENIC
SBS	Chr3	19115029	C-T	Hetero	INTERGENIC
SBS	Chr3	21985726	A-G	Hetero	INTERGENIC
SBS	Chr3	23511412	C-A	Hetero	INTERGENIC
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr4	8333595	C-G	Homo	INTERGENIC
SBS	Chr4	8554221	G-A	Hetero	INTERGENIC
SBS	Chr4	13530568	A-G	Homo	INTERGENIC
SBS	Chr4	14465297	T-G	Homo	INTERGENIC
SBS	Chr4	32969829	T-C	Homo	INTERGENIC
SBS	Chr5	7164233	G-T	Hetero	INTERGENIC
SBS	Chr5	7164234	T-G	Hetero	INTERGENIC
SBS	Chr6	354474	C-T	Hetero	INTERGENIC
SBS	Chr6	12179311	G-T	Hetero	INTERGENIC
SBS	Chr6	22133886	A-C	Hetero	INTERGENIC
SBS	Chr6	22156618	A-G	Hetero	INTERGENIC
SBS	Chr7	15577991	A-T	Hetero	INTERGENIC
SBS	Chr7	27605513	A-T	Hetero	INTERGENIC
SBS	Chr8	5591137	C-T	Hetero	INTERGENIC
SBS	Chr8	19434270	A-G	Hetero	INTERGENIC
SBS	Chr9	9001330	T-A	Hetero	INTERGENIC
SBS	Chr9	18105916	A-T	Homo	INTERGENIC
SBS	Chr10	2386672	C-T	Hetero	INTERGENIC
SBS	Chr10	3728335	G-A	Hetero	INTRON
SBS	Chr10	13155340	C-T	Hetero	INTERGENIC
SBS	Chr10	16450371	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	7624368	G-T	Homo	INTERGENIC
SBS	Chr12	3040570	C-T	Hetero	INTERGENIC
SBS	Chr12	10433076	G-A	Hetero	INTERGENIC
SBS	Chr12	11522770	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	157816	157826	10	OsKitaake05g001600
Deletion	Chr7	167783	167789	6
Deletion	Chr4	816499	816504	5	OsKitaake04g006200
Deletion	Chr2	1754734	1754736	2
Deletion	Chr8	7274001	7322000	47999	OsKitaake08g069800
Deletion	Chr12	8530232	8530233	1
Deletion	Chr10	8669078	8669739	661
Deletion	Chr1	8923032	8923036	4	OsKitaake01g111500
Deletion	Chr3	9879822	9879823	1
Deletion	Chr10	13372563	13372571	8
Deletion	Chr9	15127700	15127708	8
Deletion	Chr4	18311480	18311486	6
Deletion	Chr3	19333272	19333276	4
Deletion	Chr12	20243334	20243336	2
Deletion	Chr3	22414323	22414328	5
Deletion	Chr2	24087130	24087135	5
Deletion	Chr4	32624880	32624892	12
Deletion	Chr4	32644491	32644514	23

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	18954004	19134983
Inversion	Chr5	18954011	19134988
Inversion	Chr1	21931964	22727767
Inversion	Chr1	21931974	22727775

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes