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Mutant Information

Mutant Name	FN915-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN915-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3635102 G-T Hetero INTERGENIC
SBS Chr1 10695089 C-A Homo INTERGENIC
SBS Chr1 11479657 G-A Homo INTERGENIC
SBS Chr1 21065363 C-G Homo INTERGENIC
SBS Chr1 30142683 G-A Homo INTERGENIC
SBS Chr1 43871489 G-A Hetero INTRON
SBS Chr2 10236142 T-C Homo UTR_5_PRIME
SBS Chr2 30038653 A-G Homo INTERGENIC
SBS Chr3 3189078 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g044900
SBS Chr3 4592997 C-T Homo INTERGENIC
SBS Chr3 24066032 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g257300
SBS Chr3 25694857 C-T Hetero INTERGENIC
SBS Chr3 34633152 A-T Homo INTRON
SBS Chr4 3816148 C-A Homo INTERGENIC
SBS Chr4 9778867 C-G Homo INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr4 35236270 G-C Hetero INTERGENIC
SBS Chr5 11054404 G-A Hetero INTERGENIC
SBS Chr5 24841774 C-A Hetero INTERGENIC
SBS Chr5 24841777 A-C Hetero INTERGENIC
SBS Chr6 13256909 G-A Hetero INTERGENIC
SBS Chr6 20480772 A-G Hetero INTERGENIC
SBS Chr7 15127277 C-T Hetero INTRON
SBS Chr7 16359170 A-T Homo INTERGENIC
SBS Chr7 22252889 T-C Hetero INTERGENIC
SBS Chr8 6516873 C-A Homo INTERGENIC
SBS Chr8 6533798 G-T Hetero INTERGENIC
SBS Chr8 7787050 T-A Homo INTERGENIC
SBS Chr8 21871076 G-T Hetero UTR_3_PRIME
SBS Chr10 5342343 C-T Hetero INTERGENIC
SBS Chr10 5507775 A-G Hetero INTERGENIC
SBS Chr10 17622870 C-G Hetero INTERGENIC
SBS Chr11 4583769 T-C Homo INTERGENIC
SBS Chr11 5590077 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g068400
SBS Chr11 12567457 A-T Hetero INTERGENIC
SBS Chr11 20195707 C-T Hetero INTERGENIC
SBS Chr12 10629221 T-C Hetero INTERGENIC
SBS Chr12 11762097 T-A Hetero INTERGENIC
SBS Chr12 14159572 C-G Homo NON_SYNONYMOUS_CODING OsKitaake12g115100

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2362745 2362756 11 OsKitaake02g034700
Deletion Chr1 3891005 3891007 2
Deletion Chr8 4267352 4267354 2
Deletion Chr6 6373171 6373182 11
Deletion Chr8 7571429 7571431 2
Deletion Chr5 8272866 8272868 2
Deletion Chr2 10243200 10243204 4
Deletion Chr7 10492560 10492565 5
Deletion Chr6 10636524 10636624 100 OsKitaake06g119501
Deletion Chr8 10806835 10806909 74
Deletion Chr5 13275172 13275185 13
Deletion Chr5 15805218 15805252 34
Deletion Chr10 16302935 16302936 1
Deletion Chr10 17642754 17642758 4
Deletion Chr5 24841560 24841561 1
Deletion Chr7 28154003 28154004 1
Deletion Chr7 28589068 28589069 1
Deletion Chr3 32020772 32020774 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 35237573 35237576 2
Insertion Chr8 3014727 3014730 2
Insertion Chr8 11486230 11486233 2
Insertion Chr10 8428571 8428576 4
Insertion Chr12 10596599 10596602 2
Insertion Chr12 14489846 14489848 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 11038843 11308799
Inversion Chr10 11038848 11148494

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3635102	G-T	Hetero	INTERGENIC
SBS	Chr1	10695089	C-A	Homo	INTERGENIC
SBS	Chr1	11479657	G-A	Homo	INTERGENIC
SBS	Chr1	21065363	C-G	Homo	INTERGENIC
SBS	Chr1	30142683	G-A	Homo	INTERGENIC
SBS	Chr1	43871489	G-A	Hetero	INTRON
SBS	Chr2	10236142	T-C	Homo	UTR_5_PRIME
SBS	Chr2	30038653	A-G	Homo	INTERGENIC
SBS	Chr3	3189078	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g044900
SBS	Chr3	4592997	C-T	Homo	INTERGENIC
SBS	Chr3	24066032	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g257300
SBS	Chr3	25694857	C-T	Hetero	INTERGENIC
SBS	Chr3	34633152	A-T	Homo	INTRON
SBS	Chr4	3816148	C-A	Homo	INTERGENIC
SBS	Chr4	9778867	C-G	Homo	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr4	35236270	G-C	Hetero	INTERGENIC
SBS	Chr5	11054404	G-A	Hetero	INTERGENIC
SBS	Chr5	24841774	C-A	Hetero	INTERGENIC
SBS	Chr5	24841777	A-C	Hetero	INTERGENIC
SBS	Chr6	13256909	G-A	Hetero	INTERGENIC
SBS	Chr6	20480772	A-G	Hetero	INTERGENIC
SBS	Chr7	15127277	C-T	Hetero	INTRON
SBS	Chr7	16359170	A-T	Homo	INTERGENIC
SBS	Chr7	22252889	T-C	Hetero	INTERGENIC
SBS	Chr8	6516873	C-A	Homo	INTERGENIC
SBS	Chr8	6533798	G-T	Hetero	INTERGENIC
SBS	Chr8	7787050	T-A	Homo	INTERGENIC
SBS	Chr8	21871076	G-T	Hetero	UTR_3_PRIME
SBS	Chr10	5342343	C-T	Hetero	INTERGENIC
SBS	Chr10	5507775	A-G	Hetero	INTERGENIC
SBS	Chr10	17622870	C-G	Hetero	INTERGENIC
SBS	Chr11	4583769	T-C	Homo	INTERGENIC
SBS	Chr11	5590077	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g068400
SBS	Chr11	12567457	A-T	Hetero	INTERGENIC
SBS	Chr11	20195707	C-T	Hetero	INTERGENIC
SBS	Chr12	10629221	T-C	Hetero	INTERGENIC
SBS	Chr12	11762097	T-A	Hetero	INTERGENIC
SBS	Chr12	14159572	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g115100

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2362745	2362756	11	OsKitaake02g034700
Deletion	Chr1	3891005	3891007	2
Deletion	Chr8	4267352	4267354	2
Deletion	Chr6	6373171	6373182	11
Deletion	Chr8	7571429	7571431	2
Deletion	Chr5	8272866	8272868	2
Deletion	Chr2	10243200	10243204	4
Deletion	Chr7	10492560	10492565	5
Deletion	Chr6	10636524	10636624	100	OsKitaake06g119501
Deletion	Chr8	10806835	10806909	74
Deletion	Chr5	13275172	13275185	13
Deletion	Chr5	15805218	15805252	34
Deletion	Chr10	16302935	16302936	1
Deletion	Chr10	17642754	17642758	4
Deletion	Chr5	24841560	24841561	1
Deletion	Chr7	28154003	28154004	1
Deletion	Chr7	28589068	28589069	1
Deletion	Chr3	32020772	32020774	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	11038843	11308799
Inversion	Chr10	11038848	11148494

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes