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| Mutant Information |
|---|
| Mutant Name | FN916-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN916-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 406152 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 10875061 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 18512809 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 35821706 | T-C | Homo | INTRON | |
| SBS | Chr3 | 19021072 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22149418 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 22715423 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 22715424 | G-T | Homo | STOP_GAINED | OsKitaake03g245800 |
| SBS | Chr3 | 22715425 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g245800 |
| SBS | Chr3 | 31627772 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3033700 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 12107681 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19726224 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22342089 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6921490 | A-T | Homo | INTRON | |
| SBS | Chr5 | 10047093 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 11651371 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22642685 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 28689828 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 2871428 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 3611251 | A-C | Homo | INTERGENIC | |
| SBS | Chr9 | 5107652 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 11086207 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 14017491 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 17662716 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 10355620 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 3539397 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 17421871 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22899874 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 28126889 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7617166 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14063431 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18018480 | G-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2299588 | 2299589 | 1 | OsKitaake02g034200 |
| Deletion | Chr6 | 5758802 | 5758815 | 13 | |
| Deletion | Chr7 | 6730882 | 6730883 | 1 | |
| Deletion | Chr1 | 11569881 | 11570002 | 121 | |
| Deletion | Chr11 | 12253701 | 12253714 | 13 | |
| Deletion | Chr1 | 13104622 | 13104628 | 6 | |
| Deletion | Chr1 | 13394624 | 13394625 | 1 | |
| Deletion | Chr8 | 21194272 | 21194282 | 10 | |
| Deletion | Chr10 | 22132755 | 22132756 | 1 | |
| Deletion | Chr11 | 23744026 | 23744030 | 4 | |
| Deletion | Chr1 | 24378395 | 24378402 | 7 | |
| Deletion | Chr8 | 25883556 | 25883558 | 2 | |
| Deletion | Chr2 | 31007194 | 31007195 | 1 | |
| Deletion | Chr3 | 36016614 | 36016623 | 9 | OsKitaake03g397600 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 6127859 | 6239987 | |
| Inversion | Chr6 | 21001148 | 21120065 | OsKitaake06g187500 |
| Inversion | Chr6 | 21001168 | 21120069 | OsKitaake06g187500 |
| Inversion | Chr6 | 24135702 | 24696508 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 21537353 | Chr7 | 10972281 |