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Mutant Information

Mutant Name	FN917-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN917-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 303221 G-A Homo INTRON
SBS Chr1 18892445 A-G Homo INTRON
SBS Chr1 36886540 C-A Hetero INTERGENIC
SBS Chr2 36657851 A-T Hetero UTR_3_PRIME
SBS Chr3 9939553 C-A Hetero INTRON
SBS Chr3 15093205 A-G Hetero INTERGENIC
SBS Chr3 15715080 G-A Hetero INTERGENIC
SBS Chr3 17787243 T-G Hetero INTRON
SBS Chr3 22746216 G-A Hetero INTERGENIC
SBS Chr3 26939712 G-A Hetero INTERGENIC
SBS Chr4 1588804 A-G Hetero INTERGENIC
SBS Chr4 8381516 G-A Hetero INTERGENIC
SBS Chr4 16199723 G-A Hetero INTERGENIC
SBS Chr4 16199724 A-T Hetero INTERGENIC
SBS Chr5 6928327 A-G Homo INTERGENIC
SBS Chr5 11869997 G-A Homo INTERGENIC
SBS Chr5 19853066 A-G Hetero SYNONYMOUS_CODING
SBS Chr5 26685343 G-A Hetero INTERGENIC
SBS Chr5 27406508 C-G Hetero INTERGENIC
SBS Chr6 15136596 C-T Hetero INTERGENIC
SBS Chr7 3525188 A-T Homo INTRON
SBS Chr7 7658909 T-C Homo UTR_5_PRIME
SBS Chr7 12495611 C-T Homo INTERGENIC
SBS Chr7 14455916 A-G Homo INTERGENIC
SBS Chr8 10859501 G-A Hetero INTERGENIC
SBS Chr8 18384439 C-A Hetero INTRON
SBS Chr9 14739180 G-A Hetero INTERGENIC
SBS Chr12 1612702 G-C Homo INTERGENIC
SBS Chr12 1844538 G-A Homo UTR_3_PRIME
SBS Chr12 10256463 G-T Hetero INTERGENIC
SBS Chr12 16830519 G-A Hetero INTERGENIC
SBS Chr12 18686787 A-C Hetero INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 85001 124000 38999 10
Deletion Chr12 1030507 1030512 5 OsKitaake12g015600
Deletion Chr11 1583001 1895000 311999 61
Deletion Chr10 4327636 4327646 10
Deletion Chr3 4843302 4843303 1
Deletion Chr4 11442001 11491000 48999
Deletion Chr12 13986001 14133000 146999 7
Deletion Chr3 16062456 16062460 4
Deletion Chr1 19363465 19363477 12
Deletion Chr3 22999001 23178000 178999 18
Deletion Chr11 23829081 23829082 1
Deletion Chr4 24282222 24282225 3 OsKitaake04g156400
Deletion Chr6 25418251 25418252 1
Deletion Chr4 27683462 27683464 2
Deletion Chr4 28788316 28788319 3
Deletion Chr2 30285800 30285805 5
Deletion Chr4 31650685 31650689 4

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26680992 26680995 2
Insertion Chr1 38357796 38357799 2
Insertion Chr3 9902090 9902092 1
Insertion Chr4 3416809 3416812 2
Insertion Chr5 7873830 7873832 1
Insertion Chr5 28411964 28411967 2
Insertion Chr6 3041307 3041309 1
Insertion Chr8 26682322 26682325 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 20899157 20952535 OsKitaake09g178700
Inversion Chr9 20899170 20952557 OsKitaake09g178700

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 85463 Chr1 24146177 OsKitaake08g001000
Translocation Chr8 118819 Chr3 23177998 OsKitaake08g001700
Translocation Chr8 118821 Chr4 11489551 OsKitaake08g001700
Translocation Chr8 122502 Chr4 11444701 OsKitaake08g001700
Translocation Chr12 11250251 Chr8 87223
Translocation Chr12 11250273 Chr1 24146953 OsKitaake01g232000
Translocation Chr4 11489551 Chr3 23178174
Translocation Chr11 11519011 Chr3 22994907
Translocation Chr11 11519126 Chr3 23178175

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	303221	G-A	Homo	INTRON
SBS	Chr1	18892445	A-G	Homo	INTRON
SBS	Chr1	36886540	C-A	Hetero	INTERGENIC
SBS	Chr2	36657851	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	9939553	C-A	Hetero	INTRON
SBS	Chr3	15093205	A-G	Hetero	INTERGENIC
SBS	Chr3	15715080	G-A	Hetero	INTERGENIC
SBS	Chr3	17787243	T-G	Hetero	INTRON
SBS	Chr3	22746216	G-A	Hetero	INTERGENIC
SBS	Chr3	26939712	G-A	Hetero	INTERGENIC
SBS	Chr4	1588804	A-G	Hetero	INTERGENIC
SBS	Chr4	8381516	G-A	Hetero	INTERGENIC
SBS	Chr4	16199723	G-A	Hetero	INTERGENIC
SBS	Chr4	16199724	A-T	Hetero	INTERGENIC
SBS	Chr5	6928327	A-G	Homo	INTERGENIC
SBS	Chr5	11869997	G-A	Homo	INTERGENIC
SBS	Chr5	19853066	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	26685343	G-A	Hetero	INTERGENIC
SBS	Chr5	27406508	C-G	Hetero	INTERGENIC
SBS	Chr6	15136596	C-T	Hetero	INTERGENIC
SBS	Chr7	3525188	A-T	Homo	INTRON
SBS	Chr7	7658909	T-C	Homo	UTR_5_PRIME
SBS	Chr7	12495611	C-T	Homo	INTERGENIC
SBS	Chr7	14455916	A-G	Homo	INTERGENIC
SBS	Chr8	10859501	G-A	Hetero	INTERGENIC
SBS	Chr8	18384439	C-A	Hetero	INTRON
SBS	Chr9	14739180	G-A	Hetero	INTERGENIC
SBS	Chr12	1612702	G-C	Homo	INTERGENIC
SBS	Chr12	1844538	G-A	Homo	UTR_3_PRIME
SBS	Chr12	10256463	G-T	Hetero	INTERGENIC
SBS	Chr12	16830519	G-A	Hetero	INTERGENIC
SBS	Chr12	18686787	A-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	85001	124000	38999	10
Deletion	Chr12	1030507	1030512	5	OsKitaake12g015600
Deletion	Chr11	1583001	1895000	311999	61
Deletion	Chr10	4327636	4327646	10
Deletion	Chr3	4843302	4843303	1
Deletion	Chr4	11442001	11491000	48999
Deletion	Chr12	13986001	14133000	146999	7
Deletion	Chr3	16062456	16062460	4
Deletion	Chr1	19363465	19363477	12
Deletion	Chr3	22999001	23178000	178999	18
Deletion	Chr11	23829081	23829082	1
Deletion	Chr4	24282222	24282225	3	OsKitaake04g156400
Deletion	Chr6	25418251	25418252	1
Deletion	Chr4	27683462	27683464	2
Deletion	Chr4	28788316	28788319	3
Deletion	Chr2	30285800	30285805	5
Deletion	Chr4	31650685	31650689	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	20899157	20952535	OsKitaake09g178700
Inversion	Chr9	20899170	20952557	OsKitaake09g178700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes