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Mutant Information

Mutant Name	FN918-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN918-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5854726 C-T Hetero INTERGENIC
SBS Chr1 29683771 A-G Homo INTERGENIC
SBS Chr1 31384823 C-A Homo INTERGENIC
SBS Chr1 36242263 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g384400
SBS Chr1 37991076 G-T Hetero INTERGENIC
SBS Chr1 43309043 A-G Homo INTERGENIC
SBS Chr2 13045170 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g145500
SBS Chr2 25700297 A-T Hetero INTERGENIC
SBS Chr2 25700298 G-T Hetero INTERGENIC
SBS Chr2 30440788 C-T Hetero INTERGENIC
SBS Chr3 9143161 G-A Hetero UTR_3_PRIME
SBS Chr3 22368005 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g243300
SBS Chr3 32469473 A-T Hetero INTERGENIC
SBS Chr3 37288226 T-C Hetero INTRON
SBS Chr4 1876174 C-A Homo SYNONYMOUS_CODING
SBS Chr4 4547197 C-A Homo INTERGENIC
SBS Chr4 18493470 G-A Homo INTERGENIC
SBS Chr4 20155357 C-G Homo INTRON
SBS Chr4 22211691 G-A Hetero INTERGENIC
SBS Chr4 22343630 A-T Hetero INTERGENIC
SBS Chr4 31079285 C-T Homo INTERGENIC
SBS Chr5 14253101 A-T Homo INTERGENIC
SBS Chr6 25058181 G-T Hetero INTERGENIC
SBS Chr7 9000562 G-A Hetero INTERGENIC
SBS Chr8 18951157 G-T Hetero INTRON
SBS Chr9 5798090 G-T Homo INTERGENIC
SBS Chr9 5832541 A-G Homo INTRON
SBS Chr9 8852156 G-T Homo INTERGENIC
SBS Chr9 8852157 G-T Homo INTERGENIC
SBS Chr11 15966138 G-A Hetero INTERGENIC
SBS Chr12 3359402 G-T Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 318842 318853 11 OsKitaake01g004300
Deletion Chr7 428312 428313 1
Deletion Chr1 1723668 1723672 4
Deletion Chr11 3242066 3242073 7
Deletion Chr9 8913230 8913257 27
Deletion Chr11 9433995 9433996 1
Deletion Chr9 9906253 9906271 18
Deletion Chr6 11464162 11464163 1
Deletion Chr8 12134806 12134810 4
Deletion Chr10 14871074 14871084 10 OsKitaake10g092700
Deletion Chr4 15728395 15728396 1
Deletion Chr8 20129967 20129968 1
Deletion Chr11 22602031 22602035 4
Deletion Chr4 23225783 23225784 1
Deletion Chr6 23419793 23419803 10
Deletion Chr2 23832064 23832069 5
Deletion Chr7 24216819 24216823 4
Deletion Chr7 24424124 24424137 13
Deletion Chr11 27532578 27532583 5
Deletion Chr1 33711777 33711781 4
Deletion Chr4 35220621 35220632 11
Deletion Chr3 35394736 35394737 1
Deletion Chr3 37166575 37166578 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 17861161 17861164 2
Insertion Chr11 12508912 12508914 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 832254 1714155
Inversion Chr4 1214542 1714064 OsKitaake04g009600
Inversion Chr7 4619951 5489622

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 15920270 Chr6 25524636
Translocation Chr10 15920302 Chr6 25523879

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5854726	C-T	Hetero	INTERGENIC
SBS	Chr1	29683771	A-G	Homo	INTERGENIC
SBS	Chr1	31384823	C-A	Homo	INTERGENIC
SBS	Chr1	36242263	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g384400
SBS	Chr1	37991076	G-T	Hetero	INTERGENIC
SBS	Chr1	43309043	A-G	Homo	INTERGENIC
SBS	Chr2	13045170	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g145500
SBS	Chr2	25700297	A-T	Hetero	INTERGENIC
SBS	Chr2	25700298	G-T	Hetero	INTERGENIC
SBS	Chr2	30440788	C-T	Hetero	INTERGENIC
SBS	Chr3	9143161	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	22368005	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g243300
SBS	Chr3	32469473	A-T	Hetero	INTERGENIC
SBS	Chr3	37288226	T-C	Hetero	INTRON
SBS	Chr4	1876174	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr4	4547197	C-A	Homo	INTERGENIC
SBS	Chr4	18493470	G-A	Homo	INTERGENIC
SBS	Chr4	20155357	C-G	Homo	INTRON
SBS	Chr4	22211691	G-A	Hetero	INTERGENIC
SBS	Chr4	22343630	A-T	Hetero	INTERGENIC
SBS	Chr4	31079285	C-T	Homo	INTERGENIC
SBS	Chr5	14253101	A-T	Homo	INTERGENIC
SBS	Chr6	25058181	G-T	Hetero	INTERGENIC
SBS	Chr7	9000562	G-A	Hetero	INTERGENIC
SBS	Chr8	18951157	G-T	Hetero	INTRON
SBS	Chr9	5798090	G-T	Homo	INTERGENIC
SBS	Chr9	5832541	A-G	Homo	INTRON
SBS	Chr9	8852156	G-T	Homo	INTERGENIC
SBS	Chr9	8852157	G-T	Homo	INTERGENIC
SBS	Chr11	15966138	G-A	Hetero	INTERGENIC
SBS	Chr12	3359402	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	318842	318853	11	OsKitaake01g004300
Deletion	Chr7	428312	428313	1
Deletion	Chr1	1723668	1723672	4
Deletion	Chr11	3242066	3242073	7
Deletion	Chr9	8913230	8913257	27
Deletion	Chr11	9433995	9433996	1
Deletion	Chr9	9906253	9906271	18
Deletion	Chr6	11464162	11464163	1
Deletion	Chr8	12134806	12134810	4
Deletion	Chr10	14871074	14871084	10	OsKitaake10g092700
Deletion	Chr4	15728395	15728396	1
Deletion	Chr8	20129967	20129968	1
Deletion	Chr11	22602031	22602035	4
Deletion	Chr4	23225783	23225784	1
Deletion	Chr6	23419793	23419803	10
Deletion	Chr2	23832064	23832069	5
Deletion	Chr7	24216819	24216823	4
Deletion	Chr7	24424124	24424137	13
Deletion	Chr11	27532578	27532583	5
Deletion	Chr1	33711777	33711781	4
Deletion	Chr4	35220621	35220632	11
Deletion	Chr3	35394736	35394737	1
Deletion	Chr3	37166575	37166578	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	832254	1714155
Inversion	Chr4	1214542	1714064	OsKitaake04g009600
Inversion	Chr7	4619951	5489622

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes