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| Mutant Information |
|---|
| Mutant Name | FN920-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN920-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13607066 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 14520224 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 19785520 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21312605 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28254783 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 33124204 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1611454 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9950461 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 16194830 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 18429696 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 18429697 | C-T | Homo | STOP_GAINED | OsKitaake05g143600 |
| SBS | Chr5 | 26064759 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 22168438 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4186046 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 4186048 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 17792718 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 20042223 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 28151736 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 15753078 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 24575386 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4577601 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 23549840 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 23486049 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25620065 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25703746 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 25833857 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8131419 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 11034881 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21040041 | T-C | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 925101 | 925104 | 3 | |
| Deletion | Chr2 | 8652536 | 8652537 | 1 | |
| Deletion | Chr11 | 9345321 | 9345326 | 5 | |
| Deletion | Chr6 | 9970237 | 9970238 | 1 | |
| Deletion | Chr7 | 16807724 | 16807725 | 1 | |
| Deletion | Chr6 | 17914410 | 17914413 | 3 | |
| Deletion | Chr7 | 20998669 | 20998675 | 6 | |
| Deletion | Chr8 | 21575135 | 21575150 | 15 | |
| Deletion | Chr1 | 22604001 | 22657000 | 52999 | 11 |
| Deletion | Chr2 | 24020187 | 24020188 | 1 | |
| Deletion | Chr11 | 29505804 | 29505805 | 1 | OsKitaake11g242900 |
| Deletion | Chr2 | 31341999 | 31342002 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 26468825 | 26468828 | 2 | |
| Insertion | Chr8 | 615099 | 615107 | 7 | |
| Insertion | Chr10 | 2987395 | 2987398 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 22085669 | 22540570 | OsKitaake01g211500 |
| Inversion | Chr1 | 22362215 | 22540545 | |
| Inversion | Chr1 | 22553373 | 23129333 | |
| Inversion | Chr1 | 42649105 | 42858883 | OsKitaake01g470100 |
| Inversion | Chr1 | 42649112 | 42859259 | OsKitaake01g470100 |
Translocations: 10
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 119123 | Chr6 | 16551378 | |
| Translocation | Chr12 | 119253 | Chr6 | 16551379 | |
| Translocation | Chr7 | 4181571 | Chr1 | 22423212 | OsKitaake07g052900 |
| Translocation | Chr7 | 4182282 | Chr1 | 22553361 | OsKitaake07g052900 |
| Translocation | Chr3 | 16670266 | Chr1 | 42858879 | |
| Translocation | Chr3 | 16670378 | Chr1 | 42649104 | OsKitaake01g470100 |
| Translocation | Chr10 | 19195350 | Chr7 | 3851482 | OsKitaake10g138700 |
| Translocation | Chr10 | 20277283 | Chr7 | 4131029 | |
| Translocation | Chr11 | 26438144 | Chr7 | 4075235 | |
| Translocation | Chr11 | 26438544 | Chr10 | 19195351 | OsKitaake10g138700 |