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Mutant Information

Mutant Name	FN921-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN921-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8467989 T-A Hetero INTERGENIC
SBS Chr1 18198338 G-T Hetero INTERGENIC
SBS Chr1 20675625 C-T Hetero UTR_3_PRIME
SBS Chr2 13422409 T-C Hetero INTERGENIC
SBS Chr3 8628401 C-A Hetero INTERGENIC
SBS Chr4 15650478 C-A Hetero INTERGENIC
SBS Chr4 18209917 T-C Hetero INTERGENIC
SBS Chr4 19251400 A-T Hetero INTERGENIC
SBS Chr4 19392564 A-G Hetero INTERGENIC
SBS Chr4 33922058 T-C Homo INTERGENIC
SBS Chr5 7680106 T-A Hetero INTERGENIC
SBS Chr5 7689867 C-T Hetero INTERGENIC
SBS Chr5 7689870 G-T Hetero INTERGENIC
SBS Chr5 26692305 G-A Hetero INTERGENIC
SBS Chr6 6342425 C-G Homo INTERGENIC
SBS Chr6 16565062 A-T Hetero INTERGENIC
SBS Chr6 18020796 A-T Hetero INTRON
SBS Chr6 20247436 G-T Hetero INTERGENIC
SBS Chr6 22467473 C-A Hetero INTRON
SBS Chr6 23760583 G-T Hetero INTERGENIC
SBS Chr7 11638918 T-A Homo INTERGENIC
SBS Chr7 11638919 C-G Homo INTERGENIC
SBS Chr8 19380441 G-T Hetero INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 14459657 G-A Hetero INTERGENIC
SBS Chr9 18433478 T-A Hetero INTRON
SBS Chr10 15133345 C-A Hetero INTRON
SBS Chr10 16310515 G-A Hetero INTRON
SBS Chr10 17259624 C-G Hetero INTERGENIC
SBS Chr11 11796137 G-A Hetero INTERGENIC
SBS Chr12 6358186 G-T Homo INTERGENIC
SBS Chr12 9860332 G-T Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 4802700 4802711 11
Deletion Chr9 6556986 6556996 10
Deletion Chr5 7957001 8000000 42999 4
Deletion Chr2 13025001 13063000 37999 5
Deletion Chr9 14648936 14648942 6
Deletion Chr3 16214000 16214085 85
Deletion Chr4 18566699 18566703 4
Deletion Chr4 36463062 36463065 3
Deletion Chr3 36592649 36592655 6

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 10383378 10383381 2
Insertion Chr7 25703853 25703856 2
Insertion Chr7 26359796 26359799 2
Insertion Chr7 27533966 27533969 2
Insertion Chr9 15121259 15121262 2
Insertion Chr11 2896610 2896613 2
Insertion Chr10 2388527 2388530 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 6580790 6607854 OsKitaake05g066700
Inversion Chr5 6580799 6607857 OsKitaake05g066700
Inversion Chr5 7692902 7956890
Inversion Chr5 7692912 7999708

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 940858 Chr1 29158840 OsKitaake03g014100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8467989	T-A	Hetero	INTERGENIC
SBS	Chr1	18198338	G-T	Hetero	INTERGENIC
SBS	Chr1	20675625	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	13422409	T-C	Hetero	INTERGENIC
SBS	Chr3	8628401	C-A	Hetero	INTERGENIC
SBS	Chr4	15650478	C-A	Hetero	INTERGENIC
SBS	Chr4	18209917	T-C	Hetero	INTERGENIC
SBS	Chr4	19251400	A-T	Hetero	INTERGENIC
SBS	Chr4	19392564	A-G	Hetero	INTERGENIC
SBS	Chr4	33922058	T-C	Homo	INTERGENIC
SBS	Chr5	7680106	T-A	Hetero	INTERGENIC
SBS	Chr5	7689867	C-T	Hetero	INTERGENIC
SBS	Chr5	7689870	G-T	Hetero	INTERGENIC
SBS	Chr5	26692305	G-A	Hetero	INTERGENIC
SBS	Chr6	6342425	C-G	Homo	INTERGENIC
SBS	Chr6	16565062	A-T	Hetero	INTERGENIC
SBS	Chr6	18020796	A-T	Hetero	INTRON
SBS	Chr6	20247436	G-T	Hetero	INTERGENIC
SBS	Chr6	22467473	C-A	Hetero	INTRON
SBS	Chr6	23760583	G-T	Hetero	INTERGENIC
SBS	Chr7	11638918	T-A	Homo	INTERGENIC
SBS	Chr7	11638919	C-G	Homo	INTERGENIC
SBS	Chr8	19380441	G-T	Hetero	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	14459657	G-A	Hetero	INTERGENIC
SBS	Chr9	18433478	T-A	Hetero	INTRON
SBS	Chr10	15133345	C-A	Hetero	INTRON
SBS	Chr10	16310515	G-A	Hetero	INTRON
SBS	Chr10	17259624	C-G	Hetero	INTERGENIC
SBS	Chr11	11796137	G-A	Hetero	INTERGENIC
SBS	Chr12	6358186	G-T	Homo	INTERGENIC
SBS	Chr12	9860332	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	4802700	4802711	11
Deletion	Chr9	6556986	6556996	10
Deletion	Chr5	7957001	8000000	42999	4
Deletion	Chr2	13025001	13063000	37999	5
Deletion	Chr9	14648936	14648942	6
Deletion	Chr3	16214000	16214085	85
Deletion	Chr4	18566699	18566703	4
Deletion	Chr4	36463062	36463065	3
Deletion	Chr3	36592649	36592655	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6580790	6607854	OsKitaake05g066700
Inversion	Chr5	6580799	6607857	OsKitaake05g066700
Inversion	Chr5	7692902	7956890
Inversion	Chr5	7692912	7999708

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes