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Mutant Information

Mutant Name	FN923-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN923-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 446013 T-A Homo UTR_3_PRIME
SBS Chr1 4005401 C-G Hetero SYNONYMOUS_CODING
SBS Chr1 8439725 T-C Hetero INTERGENIC
SBS Chr1 10148007 C-T Homo INTERGENIC
SBS Chr1 14814069 G-T Hetero INTERGENIC
SBS Chr2 4033708 T-A Hetero INTERGENIC
SBS Chr2 6287845 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr2 24225636 G-A Homo INTERGENIC
SBS Chr3 8758926 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g119600
SBS Chr3 9366427 A-T Hetero INTERGENIC
SBS Chr3 16428407 G-A Hetero INTRON
SBS Chr3 16742914 T-A Hetero INTERGENIC
SBS Chr4 18656724 G-A Hetero INTERGENIC
SBS Chr4 21743094 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g124000
SBS Chr4 32878253 G-A Hetero INTERGENIC
SBS Chr5 1846222 G-A Hetero INTERGENIC
SBS Chr5 6011498 C-A Homo INTERGENIC
SBS Chr5 6011499 C-G Homo INTERGENIC
SBS Chr6 18283748 A-G Hetero INTRON
SBS Chr6 21103996 C-A Hetero INTERGENIC
SBS Chr7 21336513 T-A Homo INTERGENIC
SBS Chr8 4348995 C-T Hetero INTERGENIC
SBS Chr8 22139735 C-T Hetero UTR_5_PRIME
SBS Chr9 4882824 T-A Hetero INTERGENIC
SBS Chr9 9786939 G-A Homo INTERGENIC
SBS Chr9 13604244 T-G Hetero INTERGENIC
SBS Chr10 13353497 A-T Hetero INTERGENIC
SBS Chr11 14565812 C-T Hetero INTERGENIC
SBS Chr11 21979871 G-A Hetero INTERGENIC
SBS Chr11 22340649 A-T Hetero INTERGENIC
SBS Chr12 13923991 A-G Homo INTERGENIC
SBS Chr12 20363694 C-A Homo INTERGENIC
SBS Chr12 22070025 C-T Hetero INTERGENIC
SBS Chr12 22070026 T-C Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 156979 156981 2
Deletion Chr3 624737 624739 2
Deletion Chr8 627005 627014 9
Deletion Chr9 1285867 1285869 2
Deletion Chr2 1392695 1392696 1
Deletion Chr8 1788356 1788357 1
Deletion Chr12 1927049 1927054 5
Deletion Chr7 4050987 4050996 9 OsKitaake07g051301
Deletion Chr11 4237001 4281000 43999 4
Deletion Chr2 4661384 4661391 7
Deletion Chr5 4752872 4752876 4
Deletion Chr5 6014199 6014200 1
Deletion Chr5 6032923 6032932 9
Deletion Chr5 6275132 6275149 17
Deletion Chr8 7652301 7652311 10
Deletion Chr7 9399191 9399198 7
Deletion Chr2 10012562 10012564 2
Deletion Chr8 11848942 11848949 7
Deletion Chr7 13742001 13935000 192999 5
Deletion Chr5 14795795 14795816 21
Deletion Chr12 18161732 18161739 7
Deletion Chr11 19377865 19377876 11 OsKitaake11g151100
Deletion Chr4 20060490 20060495 5
Deletion Chr4 20779937 20779939 2
Deletion Chr7 21336699 21336731 32
Deletion Chr12 22135577 22135581 4
Deletion Chr7 24130670 24130674 4
Deletion Chr4 25369528 25369534 6
Deletion Chr11 27007542 27007558 16
Deletion Chr5 29219645 29219657 12

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15986072 15986075 2
Insertion Chr12 17238951 17238954 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 1669123 1733197 2
Inversion Chr2 1669126 1733206 2
Inversion Chr2 2663381 3243125 OsKitaake02g046800
Inversion Chr2 2663383 3243127 OsKitaake02g046800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	446013	T-A	Homo	UTR_3_PRIME
SBS	Chr1	4005401	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	8439725	T-C	Hetero	INTERGENIC
SBS	Chr1	10148007	C-T	Homo	INTERGENIC
SBS	Chr1	14814069	G-T	Hetero	INTERGENIC
SBS	Chr2	4033708	T-A	Hetero	INTERGENIC
SBS	Chr2	6287845	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr2	24225636	G-A	Homo	INTERGENIC
SBS	Chr3	8758926	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g119600
SBS	Chr3	9366427	A-T	Hetero	INTERGENIC
SBS	Chr3	16428407	G-A	Hetero	INTRON
SBS	Chr3	16742914	T-A	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Hetero	INTERGENIC
SBS	Chr4	21743094	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g124000
SBS	Chr4	32878253	G-A	Hetero	INTERGENIC
SBS	Chr5	1846222	G-A	Hetero	INTERGENIC
SBS	Chr5	6011498	C-A	Homo	INTERGENIC
SBS	Chr5	6011499	C-G	Homo	INTERGENIC
SBS	Chr6	18283748	A-G	Hetero	INTRON
SBS	Chr6	21103996	C-A	Hetero	INTERGENIC
SBS	Chr7	21336513	T-A	Homo	INTERGENIC
SBS	Chr8	4348995	C-T	Hetero	INTERGENIC
SBS	Chr8	22139735	C-T	Hetero	UTR_5_PRIME
SBS	Chr9	4882824	T-A	Hetero	INTERGENIC
SBS	Chr9	9786939	G-A	Homo	INTERGENIC
SBS	Chr9	13604244	T-G	Hetero	INTERGENIC
SBS	Chr10	13353497	A-T	Hetero	INTERGENIC
SBS	Chr11	14565812	C-T	Hetero	INTERGENIC
SBS	Chr11	21979871	G-A	Hetero	INTERGENIC
SBS	Chr11	22340649	A-T	Hetero	INTERGENIC
SBS	Chr12	13923991	A-G	Homo	INTERGENIC
SBS	Chr12	20363694	C-A	Homo	INTERGENIC
SBS	Chr12	22070025	C-T	Hetero	INTERGENIC
SBS	Chr12	22070026	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	156979	156981	2
Deletion	Chr3	624737	624739	2
Deletion	Chr8	627005	627014	9
Deletion	Chr9	1285867	1285869	2
Deletion	Chr2	1392695	1392696	1
Deletion	Chr8	1788356	1788357	1
Deletion	Chr12	1927049	1927054	5
Deletion	Chr7	4050987	4050996	9	OsKitaake07g051301
Deletion	Chr11	4237001	4281000	43999	4
Deletion	Chr2	4661384	4661391	7
Deletion	Chr5	4752872	4752876	4
Deletion	Chr5	6014199	6014200	1
Deletion	Chr5	6032923	6032932	9
Deletion	Chr5	6275132	6275149	17
Deletion	Chr8	7652301	7652311	10
Deletion	Chr7	9399191	9399198	7
Deletion	Chr2	10012562	10012564	2
Deletion	Chr8	11848942	11848949	7
Deletion	Chr7	13742001	13935000	192999	5
Deletion	Chr5	14795795	14795816	21
Deletion	Chr12	18161732	18161739	7
Deletion	Chr11	19377865	19377876	11	OsKitaake11g151100
Deletion	Chr4	20060490	20060495	5
Deletion	Chr4	20779937	20779939	2
Deletion	Chr7	21336699	21336731	32
Deletion	Chr12	22135577	22135581	4
Deletion	Chr7	24130670	24130674	4
Deletion	Chr4	25369528	25369534	6
Deletion	Chr11	27007542	27007558	16
Deletion	Chr5	29219645	29219657	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1669123	1733197	2
Inversion	Chr2	1669126	1733206	2
Inversion	Chr2	2663381	3243125	OsKitaake02g046800
Inversion	Chr2	2663383	3243127	OsKitaake02g046800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes