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Mutant Information

Mutant Name	FN924-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN924-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 255188 C-T Homo INTERGENIC
SBS Chr1 31740087 G-T Hetero STOP_GAINED OsKitaake01g319100
SBS Chr1 31740088 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g319100
SBS Chr2 511297 G-A Hetero UTR_3_PRIME
SBS Chr2 6858687 G-A Homo INTERGENIC
SBS Chr2 10077636 G-T Homo INTRON
SBS Chr2 11168991 T-C Hetero INTERGENIC
SBS Chr2 16140392 T-C Hetero INTRON
SBS Chr2 32467357 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 36032367 C-T Homo INTERGENIC
SBS Chr3 19223374 A-G Hetero INTERGENIC
SBS Chr3 21018834 A-T Hetero INTERGENIC
SBS Chr4 16371494 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 22315115 G-A Hetero INTERGENIC
SBS Chr5 5203602 T-C Hetero INTERGENIC
SBS Chr5 8715521 C-T Hetero INTERGENIC
SBS Chr5 9733211 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g089000
SBS Chr5 21356720 G-T Hetero INTERGENIC
SBS Chr5 21886030 C-T Hetero INTERGENIC
SBS Chr5 24177204 A-C Hetero UTR_3_PRIME
SBS Chr6 8401242 C-T Homo INTERGENIC
SBS Chr6 11722448 G-A Hetero INTERGENIC
SBS Chr6 14912305 G-A Hetero INTERGENIC
SBS Chr6 17287692 T-A Hetero INTRON
SBS Chr6 18776249 C-T Hetero INTRON
SBS Chr6 21842803 A-T Hetero INTERGENIC
SBS Chr8 5257743 G-A Hetero INTERGENIC
SBS Chr8 8968872 T-A Hetero INTERGENIC
SBS Chr8 9945597 G-A Hetero INTERGENIC
SBS Chr9 5139441 C-A Hetero INTERGENIC
SBS Chr10 6110985 T-A Hetero INTRON
SBS Chr11 497305 C-A Hetero INTERGENIC
SBS Chr11 17756465 C-T Homo INTERGENIC
SBS Chr11 23875215 C-T Hetero INTERGENIC
SBS Chr11 24817070 C-T Hetero INTERGENIC
SBS Chr12 15994531 G-A Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1572993 1572995 2
Deletion Chr7 2716001 2784000 67999 5
Deletion Chr7 2808823 2808832 9
Deletion Chr7 6301643 6301650 7
Deletion Chr12 7965001 7985000 19999 OsKitaake12g084550
Deletion Chr10 9458003 9458014 11
Deletion Chr10 11517001 11556000 38999 4
Deletion Chr2 11646571 11646572 1
Deletion Chr10 12614862 12614876 14
Deletion Chr12 13156822 13156824 2
Deletion Chr9 18067131 18067149 18 OsKitaake09g138700
Deletion Chr8 18324282 18324284 2
Deletion Chr9 19553636 19553642 6
Deletion Chr6 20677449 20677454 5
Deletion Chr6 20827546 20827555 9
Deletion Chr8 21201192 21201198 6
Deletion Chr9 22280623 22280625 2
Deletion Chr6 24105391 24105392 1 OsKitaake06g213500
Deletion Chr7 24781970 24781973 3 OsKitaake07g220900
Deletion Chr11 25036464 25036466 2
Deletion Chr1 27375001 27392000 16999 OsKitaake01g266500
Deletion Chr8 28564283 28564289 6
Deletion Chr7 28708001 28731000 22999 3
Deletion Chr4 30293142 30293146 4
Deletion Chr3 30738282 30738294 12
Deletion Chr2 31982283 31982284 1 OsKitaake02g326900

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 20940023 20940026 2
Insertion Chr5 318334 318337 2
Insertion Chr8 9393884 9393888 3
Insertion Chr9 12868536 12868538 1
Insertion Chr11 25381230 25381235 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7964687 8312988

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 479379 Chr3 19405078

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	255188	C-T	Homo	INTERGENIC
SBS	Chr1	31740087	G-T	Hetero	STOP_GAINED	OsKitaake01g319100
SBS	Chr1	31740088	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g319100
SBS	Chr2	511297	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	6858687	G-A	Homo	INTERGENIC
SBS	Chr2	10077636	G-T	Homo	INTRON
SBS	Chr2	11168991	T-C	Hetero	INTERGENIC
SBS	Chr2	16140392	T-C	Hetero	INTRON
SBS	Chr2	32467357	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	36032367	C-T	Homo	INTERGENIC
SBS	Chr3	19223374	A-G	Hetero	INTERGENIC
SBS	Chr3	21018834	A-T	Hetero	INTERGENIC
SBS	Chr4	16371494	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	22315115	G-A	Hetero	INTERGENIC
SBS	Chr5	5203602	T-C	Hetero	INTERGENIC
SBS	Chr5	8715521	C-T	Hetero	INTERGENIC
SBS	Chr5	9733211	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g089000
SBS	Chr5	21356720	G-T	Hetero	INTERGENIC
SBS	Chr5	21886030	C-T	Hetero	INTERGENIC
SBS	Chr5	24177204	A-C	Hetero	UTR_3_PRIME
SBS	Chr6	8401242	C-T	Homo	INTERGENIC
SBS	Chr6	11722448	G-A	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Hetero	INTERGENIC
SBS	Chr6	17287692	T-A	Hetero	INTRON
SBS	Chr6	18776249	C-T	Hetero	INTRON
SBS	Chr6	21842803	A-T	Hetero	INTERGENIC
SBS	Chr8	5257743	G-A	Hetero	INTERGENIC
SBS	Chr8	8968872	T-A	Hetero	INTERGENIC
SBS	Chr8	9945597	G-A	Hetero	INTERGENIC
SBS	Chr9	5139441	C-A	Hetero	INTERGENIC
SBS	Chr10	6110985	T-A	Hetero	INTRON
SBS	Chr11	497305	C-A	Hetero	INTERGENIC
SBS	Chr11	17756465	C-T	Homo	INTERGENIC
SBS	Chr11	23875215	C-T	Hetero	INTERGENIC
SBS	Chr11	24817070	C-T	Hetero	INTERGENIC
SBS	Chr12	15994531	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1572993	1572995	2
Deletion	Chr7	2716001	2784000	67999	5
Deletion	Chr7	2808823	2808832	9
Deletion	Chr7	6301643	6301650	7
Deletion	Chr12	7965001	7985000	19999	OsKitaake12g084550
Deletion	Chr10	9458003	9458014	11
Deletion	Chr10	11517001	11556000	38999	4
Deletion	Chr2	11646571	11646572	1
Deletion	Chr10	12614862	12614876	14
Deletion	Chr12	13156822	13156824	2
Deletion	Chr9	18067131	18067149	18	OsKitaake09g138700
Deletion	Chr8	18324282	18324284	2
Deletion	Chr9	19553636	19553642	6
Deletion	Chr6	20677449	20677454	5
Deletion	Chr6	20827546	20827555	9
Deletion	Chr8	21201192	21201198	6
Deletion	Chr9	22280623	22280625	2
Deletion	Chr6	24105391	24105392	1	OsKitaake06g213500
Deletion	Chr7	24781970	24781973	3	OsKitaake07g220900
Deletion	Chr11	25036464	25036466	2
Deletion	Chr1	27375001	27392000	16999	OsKitaake01g266500
Deletion	Chr8	28564283	28564289	6
Deletion	Chr7	28708001	28731000	22999	3
Deletion	Chr4	30293142	30293146	4
Deletion	Chr3	30738282	30738294	12
Deletion	Chr2	31982283	31982284	1	OsKitaake02g326900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7964687	8312988

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes