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| Mutant Information |
|---|
| Mutant Name | FN925-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN925-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2836360 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 13247189 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 1026559 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 23205393 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5927243 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23791540 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29138032 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 32576122 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g344700 |
| SBS | Chr4 | 302559 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 18152189 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 3827145 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 21314999 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 24917437 | C-A | Homo | INTRON | |
| SBS | Chr7 | 14508504 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 2234716 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8263370 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12570123 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 12750877 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14043717 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 22066444 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 11067720 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 11960885 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 20170841 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 12391035 | T-C | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2697959 | 2697975 | 16 | |
| Deletion | Chr9 | 2736389 | 2736540 | 151 | |
| Deletion | Chr7 | 3063312 | 3063318 | 6 | |
| Deletion | Chr11 | 7145593 | 7145600 | 7 | |
| Deletion | Chr8 | 11125508 | 11125509 | 1 | |
| Deletion | Chr5 | 12393707 | 12393708 | 1 | |
| Deletion | Chr5 | 15288537 | 15288539 | 2 | |
| Deletion | Chr5 | 15429295 | 15429297 | 2 | |
| Deletion | Chr11 | 15778212 | 15778223 | 11 | |
| Deletion | Chr4 | 17412372 | 17412376 | 4 | |
| Deletion | Chr6 | 18035522 | 18035523 | 1 | |
| Deletion | Chr10 | 22982066 | 22982067 | 1 | OsKitaake10g192500 |
| Deletion | Chr1 | 25745130 | 25745134 | 4 | |
| Deletion | Chr4 | 28846096 | 28846109 | 13 | |
| Deletion | Chr1 | 31278062 | 31278066 | 4 | |
| Deletion | Chr1 | 33382900 | 33382918 | 18 | |
| Deletion | Chr3 | 36308169 | 36308170 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 15317517 | 15317520 | 2 | |
| Insertion | Chr8 | 11655385 | 11655388 | 2 | |
| Insertion | Chr8 | 26561159 | 26561162 | 2 | OsKitaake08g213700  |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 4543597 | 4731749 | |
| Inversion | Chr2 | 4543603 | 4731753 | |
| Inversion | Chr5 | 25250014 | 25558494 | |
| Inversion | Chr5 | 25250030 | 25558504 |