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Mutant Information

Mutant Name	FN926-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN926-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10818569 A-G Homo INTERGENIC
SBS Chr1 10818570 A-G Homo INTERGENIC
SBS Chr1 16404635 T-G Hetero INTERGENIC
SBS Chr1 19691077 A-G Hetero INTERGENIC
SBS Chr1 42648623 A-T Hetero INTRON
SBS Chr2 1896936 C-A Hetero SYNONYMOUS_CODING
SBS Chr2 2081278 T-A Hetero INTERGENIC
SBS Chr2 7077791 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g095000
SBS Chr2 14111641 G-T Hetero INTERGENIC
SBS Chr2 20655608 G-A Homo INTERGENIC
SBS Chr2 34403102 A-G Homo SYNONYMOUS_CODING
SBS Chr3 3307880 G-A Hetero INTRON
SBS Chr3 3783445 C-A Hetero INTERGENIC
SBS Chr3 19268380 C-A Hetero INTERGENIC
SBS Chr3 29311439 C-T Homo INTERGENIC
SBS Chr3 33078384 G-A Hetero INTERGENIC
SBS Chr4 3098718 G-T Homo INTERGENIC
SBS Chr4 11620544 G-A Homo INTERGENIC
SBS Chr4 28044218 T-A Hetero INTERGENIC
SBS Chr5 12055050 A-G Hetero INTERGENIC
SBS Chr5 25249654 T-G Homo INTERGENIC
SBS Chr5 28020961 G-T Hetero UTR_3_PRIME
SBS Chr6 26695925 C-T Homo INTERGENIC
SBS Chr7 536976 C-T Homo INTERGENIC
SBS Chr7 12672381 G-A Homo INTERGENIC
SBS Chr8 2610476 A-T Hetero INTERGENIC
SBS Chr8 4782594 T-G Homo UTR_3_PRIME
SBS Chr8 12343709 T-C Hetero INTERGENIC
SBS Chr8 20710064 G-A Hetero INTERGENIC
SBS Chr9 4837761 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g027400
SBS Chr9 10489499 T-C Homo INTERGENIC
SBS Chr9 13992659 C-T Homo INTERGENIC
SBS Chr10 16751718 G-A Hetero INTERGENIC
SBS Chr11 9029750 G-A Homo INTERGENIC
SBS Chr11 10646787 G-A Homo INTRON
SBS Chr12 14512476 A-G Homo INTRON
SBS Chr12 23766568 G-A Hetero SYNONYMOUS_CODING

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 606632 606643 11
Deletion Chr4 1103522 1103527 5
Deletion Chr2 1354368 1354376 8 OsKitaake02g020800
Deletion Chr4 2464018 2464028 10
Deletion Chr4 2464127 2464128 1
Deletion Chr8 2545715 2545718 3
Deletion Chr11 4369584 4369599 15
Deletion Chr2 5787967 5787969 2
Deletion Chr5 6183595 6183597 2
Deletion Chr5 13967327 13967330 3
Deletion Chr9 14827519 14827542 23
Deletion Chr1 17568629 17568632 3
Deletion Chr12 18339464 18339531 67
Deletion Chr8 20171289 20171290 1
Deletion Chr1 21498793 21498809 16
Deletion Chr9 21966731 21966741 10 OsKitaake09g195600
Deletion Chr12 22688053 22688055 2
Deletion Chr11 24080195 24080196 1
Deletion Chr3 24178450 24178478 28
Deletion Chr4 30151103 30151104 1
Deletion Chr1 40691147 40691152 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 26798836 26798839 2
Insertion Chr4 22015723 22015726 2
Insertion Chr4 26385912 26385914 1
Insertion Chr6 7599211 7599213 1
Insertion Chr8 4450250 4450253 2
Insertion Chr11 4450706 4450709 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 28018347 28224130

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10818569	A-G	Homo	INTERGENIC
SBS	Chr1	10818570	A-G	Homo	INTERGENIC
SBS	Chr1	16404635	T-G	Hetero	INTERGENIC
SBS	Chr1	19691077	A-G	Hetero	INTERGENIC
SBS	Chr1	42648623	A-T	Hetero	INTRON
SBS	Chr2	1896936	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	2081278	T-A	Hetero	INTERGENIC
SBS	Chr2	7077791	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g095000
SBS	Chr2	14111641	G-T	Hetero	INTERGENIC
SBS	Chr2	20655608	G-A	Homo	INTERGENIC
SBS	Chr2	34403102	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr3	3307880	G-A	Hetero	INTRON
SBS	Chr3	3783445	C-A	Hetero	INTERGENIC
SBS	Chr3	19268380	C-A	Hetero	INTERGENIC
SBS	Chr3	29311439	C-T	Homo	INTERGENIC
SBS	Chr3	33078384	G-A	Hetero	INTERGENIC
SBS	Chr4	3098718	G-T	Homo	INTERGENIC
SBS	Chr4	11620544	G-A	Homo	INTERGENIC
SBS	Chr4	28044218	T-A	Hetero	INTERGENIC
SBS	Chr5	12055050	A-G	Hetero	INTERGENIC
SBS	Chr5	25249654	T-G	Homo	INTERGENIC
SBS	Chr5	28020961	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	26695925	C-T	Homo	INTERGENIC
SBS	Chr7	536976	C-T	Homo	INTERGENIC
SBS	Chr7	12672381	G-A	Homo	INTERGENIC
SBS	Chr8	2610476	A-T	Hetero	INTERGENIC
SBS	Chr8	4782594	T-G	Homo	UTR_3_PRIME
SBS	Chr8	12343709	T-C	Hetero	INTERGENIC
SBS	Chr8	20710064	G-A	Hetero	INTERGENIC
SBS	Chr9	4837761	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g027400
SBS	Chr9	10489499	T-C	Homo	INTERGENIC
SBS	Chr9	13992659	C-T	Homo	INTERGENIC
SBS	Chr10	16751718	G-A	Hetero	INTERGENIC
SBS	Chr11	9029750	G-A	Homo	INTERGENIC
SBS	Chr11	10646787	G-A	Homo	INTRON
SBS	Chr12	14512476	A-G	Homo	INTRON
SBS	Chr12	23766568	G-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	606632	606643	11
Deletion	Chr4	1103522	1103527	5
Deletion	Chr2	1354368	1354376	8	OsKitaake02g020800
Deletion	Chr4	2464018	2464028	10
Deletion	Chr4	2464127	2464128	1
Deletion	Chr8	2545715	2545718	3
Deletion	Chr11	4369584	4369599	15
Deletion	Chr2	5787967	5787969	2
Deletion	Chr5	6183595	6183597	2
Deletion	Chr5	13967327	13967330	3
Deletion	Chr9	14827519	14827542	23
Deletion	Chr1	17568629	17568632	3
Deletion	Chr12	18339464	18339531	67
Deletion	Chr8	20171289	20171290	1
Deletion	Chr1	21498793	21498809	16
Deletion	Chr9	21966731	21966741	10	OsKitaake09g195600
Deletion	Chr12	22688053	22688055	2
Deletion	Chr11	24080195	24080196	1
Deletion	Chr3	24178450	24178478	28
Deletion	Chr4	30151103	30151104	1
Deletion	Chr1	40691147	40691152	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	28018347	28224130

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes