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Mutant Information

Mutant Name	FN927-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN927-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6681232 C-G Homo INTERGENIC
SBS Chr1 17533823 G-A Homo INTERGENIC
SBS Chr1 28783970 A-G Homo INTERGENIC
SBS Chr1 36490665 T-C Hetero INTERGENIC
SBS Chr2 9337097 T-A Hetero INTERGENIC
SBS Chr2 9337098 T-G Hetero INTERGENIC
SBS Chr2 25418214 G-T Homo INTRON
SBS Chr2 31230975 C-T Hetero INTERGENIC
SBS Chr3 15668540 T-C Hetero INTERGENIC
SBS Chr3 24148570 C-T Homo INTERGENIC
SBS Chr3 31874061 A-T Homo INTERGENIC
SBS Chr4 6131776 G-T Hetero INTERGENIC
SBS Chr4 10280813 G-A Hetero INTERGENIC
SBS Chr4 16382858 G-A Homo INTERGENIC
SBS Chr5 3669619 C-T Homo INTERGENIC
SBS Chr5 11955531 G-A Hetero INTERGENIC
SBS Chr5 15226457 G-A Hetero INTERGENIC
SBS Chr5 18621004 C-T Hetero INTERGENIC
SBS Chr5 18621009 A-T Hetero INTERGENIC
SBS Chr5 21417744 T-A Hetero INTERGENIC
SBS Chr6 27362907 G-T Homo INTRON
SBS Chr7 14395701 T-A Hetero INTERGENIC
SBS Chr7 18170034 G-A Hetero INTERGENIC
SBS Chr7 18936245 A-C Hetero INTRON
SBS Chr8 4288044 C-A Hetero INTERGENIC
SBS Chr8 16277718 C-G Homo INTERGENIC
SBS Chr8 20605877 C-T Homo INTERGENIC
SBS Chr8 26535990 C-T Hetero INTRON
SBS Chr9 12821581 T-C Hetero INTERGENIC
SBS Chr9 14231430 G-T Hetero INTERGENIC
SBS Chr9 14231432 C-A Hetero INTERGENIC
SBS Chr10 3453736 C-T Hetero INTERGENIC
SBS Chr10 9815782 T-A Hetero INTERGENIC
SBS Chr10 23549955 G-T Homo INTERGENIC
SBS Chr11 12126430 A-C Hetero INTRON
SBS Chr11 13945511 C-T Hetero INTERGENIC
SBS Chr11 20932430 A-G Hetero INTERGENIC
SBS Chr11 23297415 G-C Hetero INTERGENIC
SBS Chr11 24564614 G-A Hetero INTERGENIC
SBS Chr12 15462298 C-T Hetero INTERGENIC
SBS Chr12 20941271 G-T Homo INTRON
SBS Chr12 21779264 T-G Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2095061 2095063 2
Deletion Chr2 3078775 3078776 1
Deletion Chr2 8245010 8245012 2
Deletion Chr8 10192266 10192333 67
Deletion Chr1 10234321 10234323 2
Deletion Chr5 10304566 10304567 1
Deletion Chr1 10560157 10560162 5
Deletion Chr11 10599489 10599494 5
Deletion Chr1 10877954 10877972 18
Deletion Chr12 17329856 17329857 1
Deletion Chr4 17998567 17998574 7 OsKitaake04g090700
Deletion Chr5 19108262 19108268 6
Deletion Chr2 19223100 19223115 15
Deletion Chr5 21334181 21334183 2
Deletion Chr5 28364275 28364286 11
Deletion Chr11 28464410 28464411 1
Deletion Chr1 32679846 32679853 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 34919097 34919100 2
Insertion Chr4 17263568 17263571 2
Insertion Chr10 21004215 21004219 3
Insertion Chr11 28256086 28256089 2
Insertion Chr6 1373469 1373476 6

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 6190392 6364329
Inversion Chr1 11797352 12208332
Inversion Chr1 11797354 12208339
Inversion Chr9 13307851 13463210
Inversion Chr9 13307862 13463225
Inversion Chr12 22762916 23375704 OsKitaake12g187200
Inversion Chr12 22762920 23070576 OsKitaake12g183900

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 19889787 Chr4 5878908 2
Translocation Chr9 20590949 Chr4 5879756 OsKitaake04g029400
Translocation Chr12 21856115 Chr8 251056
Translocation Chr12 23070376 Chr9 20591494 OsKitaake12g183900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6681232	C-G	Homo	INTERGENIC
SBS	Chr1	17533823	G-A	Homo	INTERGENIC
SBS	Chr1	28783970	A-G	Homo	INTERGENIC
SBS	Chr1	36490665	T-C	Hetero	INTERGENIC
SBS	Chr2	9337097	T-A	Hetero	INTERGENIC
SBS	Chr2	9337098	T-G	Hetero	INTERGENIC
SBS	Chr2	25418214	G-T	Homo	INTRON
SBS	Chr2	31230975	C-T	Hetero	INTERGENIC
SBS	Chr3	15668540	T-C	Hetero	INTERGENIC
SBS	Chr3	24148570	C-T	Homo	INTERGENIC
SBS	Chr3	31874061	A-T	Homo	INTERGENIC
SBS	Chr4	6131776	G-T	Hetero	INTERGENIC
SBS	Chr4	10280813	G-A	Hetero	INTERGENIC
SBS	Chr4	16382858	G-A	Homo	INTERGENIC
SBS	Chr5	3669619	C-T	Homo	INTERGENIC
SBS	Chr5	11955531	G-A	Hetero	INTERGENIC
SBS	Chr5	15226457	G-A	Hetero	INTERGENIC
SBS	Chr5	18621004	C-T	Hetero	INTERGENIC
SBS	Chr5	18621009	A-T	Hetero	INTERGENIC
SBS	Chr5	21417744	T-A	Hetero	INTERGENIC
SBS	Chr6	27362907	G-T	Homo	INTRON
SBS	Chr7	14395701	T-A	Hetero	INTERGENIC
SBS	Chr7	18170034	G-A	Hetero	INTERGENIC
SBS	Chr7	18936245	A-C	Hetero	INTRON
SBS	Chr8	4288044	C-A	Hetero	INTERGENIC
SBS	Chr8	16277718	C-G	Homo	INTERGENIC
SBS	Chr8	20605877	C-T	Homo	INTERGENIC
SBS	Chr8	26535990	C-T	Hetero	INTRON
SBS	Chr9	12821581	T-C	Hetero	INTERGENIC
SBS	Chr9	14231430	G-T	Hetero	INTERGENIC
SBS	Chr9	14231432	C-A	Hetero	INTERGENIC
SBS	Chr10	3453736	C-T	Hetero	INTERGENIC
SBS	Chr10	9815782	T-A	Hetero	INTERGENIC
SBS	Chr10	23549955	G-T	Homo	INTERGENIC
SBS	Chr11	12126430	A-C	Hetero	INTRON
SBS	Chr11	13945511	C-T	Hetero	INTERGENIC
SBS	Chr11	20932430	A-G	Hetero	INTERGENIC
SBS	Chr11	23297415	G-C	Hetero	INTERGENIC
SBS	Chr11	24564614	G-A	Hetero	INTERGENIC
SBS	Chr12	15462298	C-T	Hetero	INTERGENIC
SBS	Chr12	20941271	G-T	Homo	INTRON
SBS	Chr12	21779264	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2095061	2095063	2
Deletion	Chr2	3078775	3078776	1
Deletion	Chr2	8245010	8245012	2
Deletion	Chr8	10192266	10192333	67
Deletion	Chr1	10234321	10234323	2
Deletion	Chr5	10304566	10304567	1
Deletion	Chr1	10560157	10560162	5
Deletion	Chr11	10599489	10599494	5
Deletion	Chr1	10877954	10877972	18
Deletion	Chr12	17329856	17329857	1
Deletion	Chr4	17998567	17998574	7	OsKitaake04g090700
Deletion	Chr5	19108262	19108268	6
Deletion	Chr2	19223100	19223115	15
Deletion	Chr5	21334181	21334183	2
Deletion	Chr5	28364275	28364286	11
Deletion	Chr11	28464410	28464411	1
Deletion	Chr1	32679846	32679853	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6190392	6364329
Inversion	Chr1	11797352	12208332
Inversion	Chr1	11797354	12208339
Inversion	Chr9	13307851	13463210
Inversion	Chr9	13307862	13463225
Inversion	Chr12	22762916	23375704	OsKitaake12g187200
Inversion	Chr12	22762920	23070576	OsKitaake12g183900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes