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Mutant Information

Mutant Name	FN928-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN928-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4383503 A-G Hetero INTERGENIC
SBS Chr1 11497296 C-T Hetero INTERGENIC
SBS Chr1 23389205 A-C Hetero INTERGENIC
SBS Chr1 23825574 C-T Hetero INTERGENIC
SBS Chr1 27387333 G-A Hetero INTERGENIC
SBS Chr2 6361032 T-A Hetero INTRON
SBS Chr2 10047002 C-G Hetero INTERGENIC
SBS Chr3 33221970 T-G Hetero INTERGENIC
SBS Chr4 5565820 A-C Hetero INTERGENIC
SBS Chr4 6286732 A-G Hetero INTERGENIC
SBS Chr4 11597471 C-T Hetero INTERGENIC
SBS Chr4 16399067 C-T Hetero INTERGENIC
SBS Chr4 18119049 G-A Hetero INTERGENIC
SBS Chr4 24592708 G-A Hetero INTERGENIC
SBS Chr4 30262726 C-T Homo INTERGENIC
SBS Chr5 7318166 C-T Homo INTERGENIC
SBS Chr5 9351086 A-C Hetero INTERGENIC
SBS Chr5 11134597 A-C Hetero INTERGENIC
SBS Chr5 20889866 G-A Hetero INTERGENIC
SBS Chr5 23254760 G-A Hetero INTERGENIC
SBS Chr6 1263249 T-A Hetero INTERGENIC
SBS Chr6 1566504 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g018500
SBS Chr6 1566505 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g018500
SBS Chr6 28785333 T-C Hetero INTERGENIC
SBS Chr7 1595661 G-A Hetero INTERGENIC
SBS Chr7 21688735 T-A Hetero INTRON
SBS Chr7 21688736 G-A Hetero INTRON
SBS Chr7 21688737 T-A Hetero INTRON
SBS Chr7 27040143 A-C Hetero INTRON
SBS Chr7 28302920 G-T Homo INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 18212230 G-A Homo INTERGENIC
SBS Chr11 9361304 C-A Hetero INTERGENIC
SBS Chr11 21795196 A-G Hetero INTERGENIC
SBS Chr11 29439773 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g241500
SBS Chr12 2867292 G-A Homo INTERGENIC
SBS Chr12 12592674 C-T Homo INTERGENIC
SBS Chr12 21872071 G-C Homo INTERGENIC
SBS Chr12 22334252 C-G Homo INTRON

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2328088 2328090 2
Deletion Chr8 2816155 2816161 6
Deletion Chr10 2914558 2914559 1
Deletion Chr7 4643174 4643188 14 OsKitaake07g057500
Deletion Chr1 5680928 5680930 2
Deletion Chr11 8122147 8122151 4
Deletion Chr11 8168098 8168100 2
Deletion Chr7 8800396 8800400 4
Deletion Chr9 14282365 14282367 2
Deletion Chr11 15482154 15482166 12
Deletion Chr4 17512001 17956000 443999 26
Deletion Chr1 18922001 18950000 27999 3
Deletion Chr5 20106251 20106260 9
Deletion Chr6 20204336 20204384 48
Deletion Chr7 21713935 21713940 5
Deletion Chr12 21892046 21892056 10
Deletion Chr1 24416068 24416071 3
Deletion Chr7 26274055 26274060 5
Deletion Chr1 42761903 42761906 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr1 21765199 21765202 2
Insertion Chr1 22567705 22567708 2
Insertion Chr9 14860235 14860238 2
Insertion Chr11 10261435 10261440 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 16471008 16640355
Inversion Chr8 16471015 16640360

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 14324049 Chr3 21334730 OsKitaake08g112500
Translocation Chr8 14325507 Chr3 21334737 OsKitaake08g112500
Translocation Chr5 30071651 Chr3 33072835 OsKitaake03g352100
Translocation Chr5 30072380 Chr3 33072854 OsKitaake03g352100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4383503	A-G	Hetero	INTERGENIC
SBS	Chr1	11497296	C-T	Hetero	INTERGENIC
SBS	Chr1	23389205	A-C	Hetero	INTERGENIC
SBS	Chr1	23825574	C-T	Hetero	INTERGENIC
SBS	Chr1	27387333	G-A	Hetero	INTERGENIC
SBS	Chr2	6361032	T-A	Hetero	INTRON
SBS	Chr2	10047002	C-G	Hetero	INTERGENIC
SBS	Chr3	33221970	T-G	Hetero	INTERGENIC
SBS	Chr4	5565820	A-C	Hetero	INTERGENIC
SBS	Chr4	6286732	A-G	Hetero	INTERGENIC
SBS	Chr4	11597471	C-T	Hetero	INTERGENIC
SBS	Chr4	16399067	C-T	Hetero	INTERGENIC
SBS	Chr4	18119049	G-A	Hetero	INTERGENIC
SBS	Chr4	24592708	G-A	Hetero	INTERGENIC
SBS	Chr4	30262726	C-T	Homo	INTERGENIC
SBS	Chr5	7318166	C-T	Homo	INTERGENIC
SBS	Chr5	9351086	A-C	Hetero	INTERGENIC
SBS	Chr5	11134597	A-C	Hetero	INTERGENIC
SBS	Chr5	20889866	G-A	Hetero	INTERGENIC
SBS	Chr5	23254760	G-A	Hetero	INTERGENIC
SBS	Chr6	1263249	T-A	Hetero	INTERGENIC
SBS	Chr6	1566504	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g018500
SBS	Chr6	1566505	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g018500
SBS	Chr6	28785333	T-C	Hetero	INTERGENIC
SBS	Chr7	1595661	G-A	Hetero	INTERGENIC
SBS	Chr7	21688735	T-A	Hetero	INTRON
SBS	Chr7	21688736	G-A	Hetero	INTRON
SBS	Chr7	21688737	T-A	Hetero	INTRON
SBS	Chr7	27040143	A-C	Hetero	INTRON
SBS	Chr7	28302920	G-T	Homo	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	18212230	G-A	Homo	INTERGENIC
SBS	Chr11	9361304	C-A	Hetero	INTERGENIC
SBS	Chr11	21795196	A-G	Hetero	INTERGENIC
SBS	Chr11	29439773	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g241500
SBS	Chr12	2867292	G-A	Homo	INTERGENIC
SBS	Chr12	12592674	C-T	Homo	INTERGENIC
SBS	Chr12	21872071	G-C	Homo	INTERGENIC
SBS	Chr12	22334252	C-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2328088	2328090	2
Deletion	Chr8	2816155	2816161	6
Deletion	Chr10	2914558	2914559	1
Deletion	Chr7	4643174	4643188	14	OsKitaake07g057500
Deletion	Chr1	5680928	5680930	2
Deletion	Chr11	8122147	8122151	4
Deletion	Chr11	8168098	8168100	2
Deletion	Chr7	8800396	8800400	4
Deletion	Chr9	14282365	14282367	2
Deletion	Chr11	15482154	15482166	12
Deletion	Chr4	17512001	17956000	443999	26
Deletion	Chr1	18922001	18950000	27999	3
Deletion	Chr5	20106251	20106260	9
Deletion	Chr6	20204336	20204384	48
Deletion	Chr7	21713935	21713940	5
Deletion	Chr12	21892046	21892056	10
Deletion	Chr1	24416068	24416071	3
Deletion	Chr7	26274055	26274060	5
Deletion	Chr1	42761903	42761906	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16471008	16640355
Inversion	Chr8	16471015	16640360

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes