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| Mutant Information |
|---|
| Mutant Name | FN929-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN929-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19812345 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 40855047 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g444700 |
| SBS | Chr1 | 43485251 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 43485252 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3185464 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 26743462 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 33288851 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g355300 |
| SBS | Chr4 | 741799 | A-T | Homo | INTRON | |
| SBS | Chr4 | 1846897 | T-C | Homo | INTRON | |
| SBS | Chr4 | 14744021 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28460201 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g212000 |
| SBS | Chr4 | 29928757 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 30004676 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 31944369 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 15121973 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 18612289 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23662628 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 28460266 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 15352218 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 527011 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 25271376 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8647982 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 15312411 | G-T | Hetero | INTRON | |
| SBS | Chr10 | 18891070 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 19137071 | T-C | Hetero | INTRON | |
| SBS | Chr11 | 15939031 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 22110283 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 22110284 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25025411 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 25924303 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11424000 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13402370 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 13920944 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 24169869 | C-G | Hetero | INTRON |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3018937 | 3018944 | 7 | |
| Deletion | Chr10 | 5564946 | 5564957 | 11 | |
| Deletion | Chr7 | 18869321 | 18869326 | 5 | |
| Deletion | Chr7 | 19704127 | 19704129 | 2 | OsKitaake07g161000 |
| Deletion | Chr11 | 20421729 | 20421730 | 1 | |
| Deletion | Chr8 | 23039384 | 23039385 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 34336476 | 34336479 | 2 | |
| Insertion | Chr7 | 18907499 | 18907502 | 2 | |
| Insertion | Chr6 | 26366 | 26369 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 8586753 | 8629277 | |
| Inversion | Chr12 | 8586757 | 8629317 |