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| Mutant Information |
|---|
| Mutant Name | FN932-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN932-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1595257 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 14760699 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 8303166 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 27022244 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 16475 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 26569121 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17172413 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 24852057 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29184182 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6543181 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 9029861 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 11149640 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26556321 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 343867 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24559449 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 6898924 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 18924593 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 19001571 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19037345 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 11148122 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 17676695 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 16162500 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g108300 |
| SBS | Chr11 | 2713571 | C-T | Homo | INTRON | |
| SBS | Chr12 | 324983 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6010042 | C-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1456913 | 1456915 | 2 | |
| Deletion | Chr11 | 3310035 | 3310037 | 2 | |
| Deletion | Chr5 | 9148125 | 9148132 | 7 | OsKitaake05g085700 |
| Deletion | Chr6 | 12515951 | 12515952 | 1 | |
| Deletion | Chr12 | 12816919 | 12816921 | 2 | |
| Deletion | Chr10 | 18687201 | 18687203 | 2 | |
| Deletion | Chr4 | 20806001 | 20840000 | 33999 | 4 |
| Deletion | Chr1 | 23802001 | 23976000 | 173999 | 20 |
| Deletion | Chr1 | 38357836 | 38357838 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 22200846 | 22200849 | 2 | |
| Insertion | Chr6 | 87853 | 87856 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 20805615 | 21233969 | |
| Inversion | Chr4 | 20836974 | 21233977 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 11617506 | Chr2 | 13045334 | OsKitaake02g145500 |
| Translocation | Chr4 | 11617646 | Chr2 | 13045371 | OsKitaake02g145500 |