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| Mutant Information |
|---|
| Mutant Name | FN933-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN933-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1170977 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34634445 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16696680 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18541405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33186383 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 185914 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 1085660 | G-C | Hetero | INTRON | |
| SBS | Chr3 | 1963193 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21540949 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 24613377 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30269015 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12480026 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 19393202 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31125402 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g242800 |
| SBS | Chr5 | 11594567 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20085970 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 27846900 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 7765173 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6313748 | T-C | Homo | INTRON | |
| SBS | Chr8 | 29197903 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 6867811 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 9458920 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr9 | 22257993 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 3264317 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 12026908 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13165178 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 20660893 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 20660894 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 20660895 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 16267517 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g124000 |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 3407262 | 3407263 | 1 | |
| Deletion | Chr5 | 4061807 | 4061811 | 4 | |
| Deletion | Chr12 | 4601001 | 4654000 | 52999 | 6 |
| Deletion | Chr5 | 5782001 | 5809000 | 26999 | OsKitaake05g062000 |
| Deletion | Chr1 | 7892585 | 7892586 | 1 | |
| Deletion | Chr11 | 9596843 | 9596849 | 6 | |
| Deletion | Chr7 | 11760721 | 11760725 | 4 | |
| Deletion | Chr2 | 13514572 | 13514575 | 3 | |
| Deletion | Chr5 | 16603431 | 16603439 | 8 | |
| Deletion | Chr3 | 20541278 | 20541281 | 3 | |
| Deletion | Chr12 | 23309546 | 23309548 | 2 | |
| Deletion | Chr11 | 26654938 | 26654939 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 7483059 | 7483062 | 2 | |
| Insertion | Chr5 | 11803646 | 11803648 | 1 | |
| Insertion | Chr5 | 15513322 | 15513324 | 1 | |
| Insertion | Chr5 | 30225097 | 30225105 | 7 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 1361730 | 1759548 | |
| Inversion | Chr10 | 11965640 | 12357575 | 2 |
| Inversion | Chr10 | 11965671 | 12357600 | 2 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 391431 | Chr2 | 5105406 | OsKitaake08g005900 |
| Translocation | Chr8 | 391438 | Chr2 | 5091627 | OsKitaake08g005900 |
| Translocation | Chr6 | 20429015 | Chr4 | 24960822 | OsKitaake04g166800 |
| Translocation | Chr6 | 20429582 | Chr4 | 24960809 | OsKitaake04g166800 |