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Mutant Information

Mutant Name	FN934-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN934-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29266613 T-C Hetero INTERGENIC
SBS Chr1 43831641 T-A Hetero UTR_3_PRIME
SBS Chr2 7021557 G-T Homo INTERGENIC
SBS Chr2 7758081 G-A Homo INTERGENIC
SBS Chr2 24383341 C-T Homo SYNONYMOUS_CODING
SBS Chr2 24383342 G-T Homo NON_SYNONYMOUS_CODING OsKitaake02g242000
SBS Chr3 190762 T-C Hetero INTERGENIC
SBS Chr3 5197390 G-A Hetero INTERGENIC
SBS Chr3 23841242 G-A Homo INTERGENIC
SBS Chr3 28874720 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g299500
SBS Chr4 153624 G-A Hetero INTERGENIC
SBS Chr4 10729456 A-T Hetero INTERGENIC
SBS Chr4 15200100 C-A Homo INTERGENIC
SBS Chr4 16876013 A-G Hetero INTRON
SBS Chr5 11432102 A-G Hetero INTERGENIC
SBS Chr5 15999913 G-A Hetero INTERGENIC
SBS Chr5 18773122 C-G Hetero INTRON
SBS Chr5 22865595 C-T Hetero INTERGENIC
SBS Chr5 23328384 T-C Hetero INTRON
SBS Chr5 26188478 G-A Hetero INTERGENIC
SBS Chr5 26575344 G-C Hetero INTERGENIC
SBS Chr5 29391174 A-G Homo UTR_3_PRIME
SBS Chr6 3776809 G-A Hetero INTERGENIC
SBS Chr6 13050130 C-A Homo STOP_GAINED OsKitaake06g138600
SBS Chr6 14545705 G-C Homo INTERGENIC
SBS Chr6 18313842 G-T Homo INTERGENIC
SBS Chr6 21737093 C-T Hetero INTERGENIC
SBS Chr7 17088513 T-G Hetero INTERGENIC
SBS Chr7 20121559 C-A Hetero INTERGENIC
SBS Chr8 5887142 G-A Homo INTERGENIC
SBS Chr8 7101867 G-T Hetero INTERGENIC
SBS Chr8 17727419 A-C Homo INTERGENIC
SBS Chr8 26678655 A-G Homo INTRON
SBS Chr9 2614888 C-T Homo INTERGENIC
SBS Chr9 9216058 G-A Hetero INTERGENIC
SBS Chr9 15265234 G-A Hetero INTERGENIC
SBS Chr10 12756296 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g077701
SBS Chr11 9851625 C-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 6074740 6074741 1
Deletion Chr2 6852886 6852888 2
Deletion Chr2 7277001 7293000 15999
Deletion Chr2 7656001 7673000 16999 OsKitaake02g100400
Deletion Chr5 9532774 9532775 1
Deletion Chr12 11452749 11452762 13
Deletion Chr5 12515860 12515861 1
Deletion Chr1 16396601 16396605 4
Deletion Chr5 18787001 18810000 22999 3
Deletion Chr3 22913437 22913438 1
Deletion Chr11 28402319 28402322 3
Deletion Chr11 29158001 29176000 17999 3
Deletion Chr3 29278973 29278978 5
Deletion Chr3 29759488 29759489 1 OsKitaake03g311100

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 26692277 26692280 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 7293185 7986646
Inversion Chr5 18777433 18926474 OsKitaake05g146400
Inversion Chr5 18926445 19091122
Inversion Chr4 21066875 21102026 OsKitaake04g115700
Inversion Chr4 21066879 21102037 OsKitaake04g115700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 16684187 Chr5 19091125 OsKitaake11g132100
Translocation Chr11 16684410 Chr5 18789032 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29266613	T-C	Hetero	INTERGENIC
SBS	Chr1	43831641	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	7021557	G-T	Homo	INTERGENIC
SBS	Chr2	7758081	G-A	Homo	INTERGENIC
SBS	Chr2	24383341	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	24383342	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g242000
SBS	Chr3	190762	T-C	Hetero	INTERGENIC
SBS	Chr3	5197390	G-A	Hetero	INTERGENIC
SBS	Chr3	23841242	G-A	Homo	INTERGENIC
SBS	Chr3	28874720	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g299500
SBS	Chr4	153624	G-A	Hetero	INTERGENIC
SBS	Chr4	10729456	A-T	Hetero	INTERGENIC
SBS	Chr4	15200100	C-A	Homo	INTERGENIC
SBS	Chr4	16876013	A-G	Hetero	INTRON
SBS	Chr5	11432102	A-G	Hetero	INTERGENIC
SBS	Chr5	15999913	G-A	Hetero	INTERGENIC
SBS	Chr5	18773122	C-G	Hetero	INTRON
SBS	Chr5	22865595	C-T	Hetero	INTERGENIC
SBS	Chr5	23328384	T-C	Hetero	INTRON
SBS	Chr5	26188478	G-A	Hetero	INTERGENIC
SBS	Chr5	26575344	G-C	Hetero	INTERGENIC
SBS	Chr5	29391174	A-G	Homo	UTR_3_PRIME
SBS	Chr6	3776809	G-A	Hetero	INTERGENIC
SBS	Chr6	13050130	C-A	Homo	STOP_GAINED	OsKitaake06g138600
SBS	Chr6	14545705	G-C	Homo	INTERGENIC
SBS	Chr6	18313842	G-T	Homo	INTERGENIC
SBS	Chr6	21737093	C-T	Hetero	INTERGENIC
SBS	Chr7	17088513	T-G	Hetero	INTERGENIC
SBS	Chr7	20121559	C-A	Hetero	INTERGENIC
SBS	Chr8	5887142	G-A	Homo	INTERGENIC
SBS	Chr8	7101867	G-T	Hetero	INTERGENIC
SBS	Chr8	17727419	A-C	Homo	INTERGENIC
SBS	Chr8	26678655	A-G	Homo	INTRON
SBS	Chr9	2614888	C-T	Homo	INTERGENIC
SBS	Chr9	9216058	G-A	Hetero	INTERGENIC
SBS	Chr9	15265234	G-A	Hetero	INTERGENIC
SBS	Chr10	12756296	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g077701
SBS	Chr11	9851625	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	6074740	6074741	1
Deletion	Chr2	6852886	6852888	2
Deletion	Chr2	7277001	7293000	15999
Deletion	Chr2	7656001	7673000	16999	OsKitaake02g100400
Deletion	Chr5	9532774	9532775	1
Deletion	Chr12	11452749	11452762	13
Deletion	Chr5	12515860	12515861	1
Deletion	Chr1	16396601	16396605	4
Deletion	Chr5	18787001	18810000	22999	3
Deletion	Chr3	22913437	22913438	1
Deletion	Chr11	28402319	28402322	3
Deletion	Chr11	29158001	29176000	17999	3
Deletion	Chr3	29278973	29278978	5
Deletion	Chr3	29759488	29759489	1	OsKitaake03g311100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	7293185	7986646
Inversion	Chr5	18777433	18926474	OsKitaake05g146400
Inversion	Chr5	18926445	19091122
Inversion	Chr4	21066875	21102026	OsKitaake04g115700
Inversion	Chr4	21066879	21102037	OsKitaake04g115700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes