Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN935-S [Download] |
| Generation | M2-SOS |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN935-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 5527610 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 11871970 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12903928 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14766657 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14766658 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 21210595 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33241945 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 17221939 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 24346850 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25741890 | T-C | Hetero | SPLICE_SITE_ACCEPTOR | OsKitaake03g271400 |
| SBS | Chr3 | 36961499 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14561630 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 15463120 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21736300 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24738351 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27914720 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 9326008 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19024434 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6190754 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 9390215 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14677834 | T-C | Hetero | INTRON | |
| SBS | Chr10 | 18444666 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18419405 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 1101507 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7824757 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 20473530 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26837500 | A-T | Hetero | SYNONYMOUS_CODING |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 11688132 | 11688297 | 165 | |
| Deletion | Chr7 | 14590586 | 14590596 | 10 | |
| Deletion | Chr12 | 17997301 | 17997302 | 1 | OsKitaake12g132300 |
| Deletion | Chr1 | 25274001 | 25329000 | 54999 | 4 |
| Deletion | Chr8 | 28338630 | 28338631 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 26906589 | 26906592 | 2 | |
| Insertion | Chr12 | 25394515 | 25394518 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 9990886 | 10043402 | OsKitaake02g121000 |
| Inversion | Chr4 | 11783157 | 11791495 | |
| Inversion | Chr2 | 20996401 | 21134741 | |
| Inversion | Chr2 | 36057326 | 36164389 | OsKitaake02g382200 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 489173 | Chr3 | 19167618 | |
| Translocation | Chr5 | 489229 | Chr3 | 19167769 | |
| Translocation | Chr5 | 26739012 | Chr2 | 36057331 | |
| Translocation | Chr5 | 26742235 | Chr2 | 36164391 | 2 |
| Translocation | Chr5 | 29537235 | Chr2 | 21135394 | OsKitaake05g280900 |