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| Mutant Information |
|---|
| Mutant Name | FN936-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN936-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2612424 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 25192594 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 25192595 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 35333747 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 1744539 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 22001520 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31899685 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 34779779 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 34779781 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 23347345 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 14565645 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19235909 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 29406022 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 4027545 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 9933207 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 12776461 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 14952664 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20255239 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr6 | 24934171 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 27594453 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 7681976 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1638193 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9595686 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9774527 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13223778 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 17659198 | A-T | Homo | INTRON | |
| SBS | Chr12 | 25584037 | T-A | Hetero | UTR_3_PRIME |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 126363 | 126365 | 2 | |
| Deletion | Chr6 | 691001 | 700000 | 8999 | 3 |
| Deletion | Chr3 | 2236001 | 2300000 | 63999 | 6 |
| Deletion | Chr11 | 2511725 | 2511727 | 2 | |
| Deletion | Chr9 | 9533001 | 9570000 | 36999 | 2 |
| Deletion | Chr7 | 13056001 | 13073000 | 16999 | OsKitaake07g115400 |
| Deletion | Chr8 | 16004741 | 16004743 | 2 | |
| Deletion | Chr12 | 21778158 | 21778163 | 5 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 19921193 | 19921195 | 1 | OsKitaake05g158200  |
| Insertion | Chr5 | 30256122 | 30256124 | 1 | |
| Insertion | Chr7 | 11984659 | 11984661 | 1 | |
| Insertion | Chr12 | 11688580 | 11688582 | 1 | |
| Insertion | Chr12 | 16545651 | 16545655 | 3 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 3093844 | 3252544 | |
| Inversion | Chr9 | 9536451 | 9790596 | OsKitaake09g057900 |
| Inversion | Chr9 | 9566556 | 9791227 |
Translocations: 7
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 700513 | Chr3 | 2299192 | |
| Translocation | Chr6 | 707795 | Chr3 | 2236168 | OsKitaake03g032300 |
| Translocation | Chr6 | 707814 | Chr3 | 2299063 | |
| Translocation | Chr9 | 9790603 | Chr7 | 13873755 | |
| Translocation | Chr9 | 9791197 | Chr7 | 13875366 | |
| Translocation | Chr7 | 15708614 | Chr3 | 24953304 | |
| Translocation | Chr7 | 15708618 | Chr3 | 24952272 |