Search Kitaake

Mutant Information

Mutant Name	FN937-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN937-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24780162 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g239100
SBS Chr2 8292757 C-A Hetero UTR_5_PRIME
SBS Chr2 13564083 C-T Homo INTERGENIC
SBS Chr3 1241689 G-T Hetero INTERGENIC
SBS Chr3 9788584 A-T Hetero INTERGENIC
SBS Chr3 12687915 C-A Hetero INTERGENIC
SBS Chr3 22667079 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g245500
SBS Chr3 22858858 C-T Hetero INTRON
SBS Chr3 36217648 G-A Hetero UTR_3_PRIME
SBS Chr4 7023187 G-C Hetero INTERGENIC
SBS Chr4 14982289 T-A Homo INTERGENIC
SBS Chr4 32101403 T-A Homo INTRON
SBS Chr5 2219375 A-G Homo UTR_3_PRIME
SBS Chr5 5552506 T-G Hetero INTERGENIC
SBS Chr5 22507524 T-A Hetero INTRON
SBS Chr5 28793284 G-A Hetero INTERGENIC
SBS Chr6 14324488 T-C Homo INTERGENIC
SBS Chr7 2196114 G-A Hetero INTERGENIC
SBS Chr7 28402718 G-A Homo INTERGENIC
SBS Chr8 6468026 C-A Homo INTERGENIC
SBS Chr8 9883301 C-G Homo INTERGENIC
SBS Chr8 27430769 G-A Homo INTERGENIC
SBS Chr9 8343138 G-C Hetero INTERGENIC
SBS Chr9 11928670 A-G Hetero INTERGENIC
SBS Chr9 18449035 T-A Hetero INTERGENIC
SBS Chr10 1087175 C-T Homo INTERGENIC
SBS Chr10 9964607 C-A Hetero INTERGENIC
SBS Chr10 17883856 C-T Homo INTERGENIC
SBS Chr11 1345297 A-G Hetero INTERGENIC
SBS Chr11 12984540 C-G Hetero INTERGENIC
SBS Chr12 487071 G-A Homo START_GAINED
SBS Chr12 18329286 G-C Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2564461 2564462 1
Deletion Chr6 2619776 2619784 8
Deletion Chr4 7833001 8106000 272999 21
Deletion Chr1 9347927 9347931 4
Deletion Chr1 11495078 11495089 11
Deletion Chr10 16829528 16829534 6
Deletion Chr11 20138634 20138731 97
Deletion Chr12 22013030 22013035 5
Deletion Chr10 22463247 22463256 9
Deletion Chr1 24135564 24135574 10
Deletion Chr7 26424538 26424544 6
Deletion Chr4 30540499 30540501 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 22124254 22124261 6
Insertion Chr2 27338638 27338640 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 20943249 21665701 OsKitaake01g208800
Inversion Chr1 20943253 21665703 OsKitaake01g208800

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 28960613 Chr1 30478331

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24780162	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g239100
SBS	Chr2	8292757	C-A	Hetero	UTR_5_PRIME
SBS	Chr2	13564083	C-T	Homo	INTERGENIC
SBS	Chr3	1241689	G-T	Hetero	INTERGENIC
SBS	Chr3	9788584	A-T	Hetero	INTERGENIC
SBS	Chr3	12687915	C-A	Hetero	INTERGENIC
SBS	Chr3	22667079	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g245500
SBS	Chr3	22858858	C-T	Hetero	INTRON
SBS	Chr3	36217648	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	7023187	G-C	Hetero	INTERGENIC
SBS	Chr4	14982289	T-A	Homo	INTERGENIC
SBS	Chr4	32101403	T-A	Homo	INTRON
SBS	Chr5	2219375	A-G	Homo	UTR_3_PRIME
SBS	Chr5	5552506	T-G	Hetero	INTERGENIC
SBS	Chr5	22507524	T-A	Hetero	INTRON
SBS	Chr5	28793284	G-A	Hetero	INTERGENIC
SBS	Chr6	14324488	T-C	Homo	INTERGENIC
SBS	Chr7	2196114	G-A	Hetero	INTERGENIC
SBS	Chr7	28402718	G-A	Homo	INTERGENIC
SBS	Chr8	6468026	C-A	Homo	INTERGENIC
SBS	Chr8	9883301	C-G	Homo	INTERGENIC
SBS	Chr8	27430769	G-A	Homo	INTERGENIC
SBS	Chr9	8343138	G-C	Hetero	INTERGENIC
SBS	Chr9	11928670	A-G	Hetero	INTERGENIC
SBS	Chr9	18449035	T-A	Hetero	INTERGENIC
SBS	Chr10	1087175	C-T	Homo	INTERGENIC
SBS	Chr10	9964607	C-A	Hetero	INTERGENIC
SBS	Chr10	17883856	C-T	Homo	INTERGENIC
SBS	Chr11	1345297	A-G	Hetero	INTERGENIC
SBS	Chr11	12984540	C-G	Hetero	INTERGENIC
SBS	Chr12	487071	G-A	Homo	START_GAINED
SBS	Chr12	18329286	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2564461	2564462	1
Deletion	Chr6	2619776	2619784	8
Deletion	Chr4	7833001	8106000	272999	21
Deletion	Chr1	9347927	9347931	4
Deletion	Chr1	11495078	11495089	11
Deletion	Chr10	16829528	16829534	6
Deletion	Chr11	20138634	20138731	97
Deletion	Chr12	22013030	22013035	5
Deletion	Chr10	22463247	22463256	9
Deletion	Chr1	24135564	24135574	10
Deletion	Chr7	26424538	26424544	6
Deletion	Chr4	30540499	30540501	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	20943249	21665701	OsKitaake01g208800
Inversion	Chr1	20943253	21665703	OsKitaake01g208800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes