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| Mutant Information |
|---|
| Mutant Name | FN938-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN938-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 625485 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 24572937 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 24786955 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27555986 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 30952816 | A-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 35182132 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15782384 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 19454547 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 31333199 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 2383305 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27264767 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 29360692 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 5130793 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9521189 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 13994913 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 19216169 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 2406031 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 14303898 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g115750 |
| SBS | Chr12 | 17677886 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21727344 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 23570662 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 25177708 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26871789 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26871792 | T-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 6409752 | 6409753 | 1 | |
| Deletion | Chr1 | 11044326 | 11044328 | 2 | |
| Deletion | Chr1 | 14006520 | 14006528 | 8 | OsKitaake01g161200 |
| Deletion | Chr11 | 19523763 | 19523765 | 2 | |
| Deletion | Chr7 | 27454717 | 27454718 | 1 | |
| Deletion | Chr6 | 28528182 | 28528188 | 6 | |
| Deletion | Chr5 | 30258420 | 30258421 | 1 | |
| Deletion | Chr3 | 30662200 | 30662208 | 8 | OsKitaake03g322300 |
| Deletion | Chr4 | 34882748 | 34882760 | 12 |
Insertions: 6
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 10210666 | 10261097 | OsKitaake03g139500 |
| Inversion | Chr3 | 10210667 | 10261097 | OsKitaake03g139500 |