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Mutant Information

Mutant Name	FN940-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN940-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17418506 C-T Homo INTERGENIC
SBS Chr1 23052954 G-A Homo INTERGENIC
SBS Chr1 27047820 G-A Hetero INTERGENIC
SBS Chr1 27328752 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g265900
SBS Chr1 32690936 A-T Hetero INTERGENIC
SBS Chr2 8689304 G-A Hetero INTRON
SBS Chr2 26688316 C-A Homo INTERGENIC
SBS Chr3 31894239 G-A Hetero INTERGENIC
SBS Chr4 28236747 T-C Hetero INTERGENIC
SBS Chr4 28888843 C-T Homo INTERGENIC
SBS Chr5 25231253 G-T Hetero INTERGENIC
SBS Chr7 28168252 G-A Hetero INTERGENIC
SBS Chr7 28168253 G-A Hetero INTERGENIC
SBS Chr8 9063773 T-A Hetero INTERGENIC
SBS Chr8 22526163 C-G Hetero INTERGENIC
SBS Chr8 28824797 A-T Homo INTRON
SBS Chr9 6984752 G-A Homo INTERGENIC
SBS Chr9 12559110 T-A Hetero INTERGENIC
SBS Chr10 5735398 G-T Hetero INTERGENIC
SBS Chr10 9867831 T-C Hetero INTERGENIC
SBS Chr10 19460759 C-A Hetero INTERGENIC
SBS Chr11 5804590 G-A Homo INTERGENIC
SBS Chr11 10126564 T-G Homo INTRON
SBS Chr11 15543318 A-G Homo INTERGENIC
SBS Chr11 17503538 G-C Homo UTR_5_PRIME
SBS Chr11 21804321 A-T Hetero INTERGENIC
SBS Chr11 27787535 T-G Hetero INTRON
SBS Chr12 1664418 G-A Homo SPLICE_SITE_REGION
SBS Chr12 7799672 G-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 11283 11284 1
Deletion Chr6 3836255 3836261 6
Deletion Chr2 5595601 5595602 1
Deletion Chr6 6389074 6389075 1
Deletion Chr10 10203767 10203877 110
Deletion Chr8 10355001 10394000 38999 5
Deletion Chr7 12991964 12992031 67
Deletion Chr11 15702855 15702856 1
Deletion Chr6 30852335 30852336 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 27872166 27872169 2
Insertion Chr9 10007843 10007846 2
Insertion Chr11 17557096 17557100 3
Insertion Chr3 697741 697745 3
Insertion Chr6 16020336 16020338 1 OsKitaake06g154000

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 21585655 21784866 OsKitaake10g172200
Inversion Chr10 21585661 21784871 OsKitaake10g172200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17418506	C-T	Homo	INTERGENIC
SBS	Chr1	23052954	G-A	Homo	INTERGENIC
SBS	Chr1	27047820	G-A	Hetero	INTERGENIC
SBS	Chr1	27328752	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g265900
SBS	Chr1	32690936	A-T	Hetero	INTERGENIC
SBS	Chr2	8689304	G-A	Hetero	INTRON
SBS	Chr2	26688316	C-A	Homo	INTERGENIC
SBS	Chr3	31894239	G-A	Hetero	INTERGENIC
SBS	Chr4	28236747	T-C	Hetero	INTERGENIC
SBS	Chr4	28888843	C-T	Homo	INTERGENIC
SBS	Chr5	25231253	G-T	Hetero	INTERGENIC
SBS	Chr7	28168252	G-A	Hetero	INTERGENIC
SBS	Chr7	28168253	G-A	Hetero	INTERGENIC
SBS	Chr8	9063773	T-A	Hetero	INTERGENIC
SBS	Chr8	22526163	C-G	Hetero	INTERGENIC
SBS	Chr8	28824797	A-T	Homo	INTRON
SBS	Chr9	6984752	G-A	Homo	INTERGENIC
SBS	Chr9	12559110	T-A	Hetero	INTERGENIC
SBS	Chr10	5735398	G-T	Hetero	INTERGENIC
SBS	Chr10	9867831	T-C	Hetero	INTERGENIC
SBS	Chr10	19460759	C-A	Hetero	INTERGENIC
SBS	Chr11	5804590	G-A	Homo	INTERGENIC
SBS	Chr11	10126564	T-G	Homo	INTRON
SBS	Chr11	15543318	A-G	Homo	INTERGENIC
SBS	Chr11	17503538	G-C	Homo	UTR_5_PRIME
SBS	Chr11	21804321	A-T	Hetero	INTERGENIC
SBS	Chr11	27787535	T-G	Hetero	INTRON
SBS	Chr12	1664418	G-A	Homo	SPLICE_SITE_REGION
SBS	Chr12	7799672	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	11283	11284	1
Deletion	Chr6	3836255	3836261	6
Deletion	Chr2	5595601	5595602	1
Deletion	Chr6	6389074	6389075	1
Deletion	Chr10	10203767	10203877	110
Deletion	Chr8	10355001	10394000	38999	5
Deletion	Chr7	12991964	12992031	67
Deletion	Chr11	15702855	15702856	1
Deletion	Chr6	30852335	30852336	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	21585655	21784866	OsKitaake10g172200
Inversion	Chr10	21585661	21784871	OsKitaake10g172200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes