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Mutant Information

Mutant Name	FN941-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN941-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29762177 G-T Hetero INTERGENIC
SBS Chr1 30268745 A-G Homo UTR_3_PRIME
SBS Chr2 5200479 C-T Hetero INTERGENIC
SBS Chr2 28019783 C-T Homo INTERGENIC
SBS Chr3 16752567 C-T Homo INTERGENIC
SBS Chr3 35428101 T-C Homo INTERGENIC
SBS Chr4 32479374 T-A Hetero INTRON
SBS Chr5 6074279 G-A Hetero UTR_5_PRIME
SBS Chr5 8606289 C-T Hetero INTERGENIC
SBS Chr5 8704048 C-G Hetero INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr5 27492201 T-C Homo INTERGENIC
SBS Chr5 29802729 T-A Homo UTR_5_PRIME
SBS Chr5 29802731 G-A Homo UTR_5_PRIME
SBS Chr6 6775954 C-T Hetero INTERGENIC
SBS Chr6 30297095 T-A Hetero INTRON
SBS Chr7 2013332 A-G Hetero INTERGENIC
SBS Chr7 9103667 G-A Homo INTERGENIC
SBS Chr7 9103669 G-A Homo INTERGENIC
SBS Chr7 9103671 C-A Homo INTERGENIC
SBS Chr7 19307848 A-T Homo INTERGENIC
SBS Chr8 16619798 G-A Hetero INTERGENIC
SBS Chr8 18901226 A-C Homo INTRON
SBS Chr8 23692052 C-T Hetero INTERGENIC
SBS Chr10 13875362 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g084800
SBS Chr10 16786192 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 18870699 C-T Homo INTERGENIC
SBS Chr11 24327003 T-A Hetero INTERGENIC
SBS Chr11 25486997 G-A Hetero INTERGENIC
SBS Chr12 1803134 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g026900
SBS Chr12 9691317 A-G Homo INTERGENIC
SBS Chr12 10136170 G-A Homo INTRON
SBS Chr12 22153112 C-T Hetero INTRON
SBS Chr12 23058803 C-T Hetero INTRON

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2850971 2851292 321
Deletion Chr12 5438205 5438212 7
Deletion Chr7 12417588 12417590 2 OsKitaake07g111000
Deletion Chr1 12446106 12446107 1
Deletion Chr5 15861793 15861794 1
Deletion Chr12 16425383 16425384 1
Deletion Chr3 17538124 17538125 1
Deletion Chr11 18237001 18322000 84999 6
Deletion Chr7 18771418 18771419 1
Deletion Chr5 22446514 22446519 5
Deletion Chr9 22554001 22610000 55999 11
Deletion Chr12 23893001 23949000 55999 4
Deletion Chr6 24330653 24330654 1
Deletion Chr4 30859856 30859857 1
Deletion Chr3 36371796 36371798 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13125787 13125790 2
Insertion Chr4 29716800 29716803 2
Insertion Chr4 29847631 29847634 2
Insertion Chr9 22247724 22247727 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 8608094 8653831 OsKitaake08g079700
Inversion Chr8 8608104 8655009 OsKitaake08g079700
Inversion Chr1 9487769 9586589 OsKitaake01g121600
Inversion Chr1 9487775 9586587 OsKitaake01g121600
Inversion Chr12 23893751 24055675
Inversion Chr12 23948232 24055678

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 8653851 Chr5 6196196 OsKitaake08g079700
Translocation Chr8 8654977 Chr5 6196195 OsKitaake08g079700
Translocation Chr12 12145873 Chr1 30258618
Translocation Chr12 12145882 Chr1 30259068

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29762177	G-T	Hetero	INTERGENIC
SBS	Chr1	30268745	A-G	Homo	UTR_3_PRIME
SBS	Chr2	5200479	C-T	Hetero	INTERGENIC
SBS	Chr2	28019783	C-T	Homo	INTERGENIC
SBS	Chr3	16752567	C-T	Homo	INTERGENIC
SBS	Chr3	35428101	T-C	Homo	INTERGENIC
SBS	Chr4	32479374	T-A	Hetero	INTRON
SBS	Chr5	6074279	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	8606289	C-T	Hetero	INTERGENIC
SBS	Chr5	8704048	C-G	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	27492201	T-C	Homo	INTERGENIC
SBS	Chr5	29802729	T-A	Homo	UTR_5_PRIME
SBS	Chr5	29802731	G-A	Homo	UTR_5_PRIME
SBS	Chr6	6775954	C-T	Hetero	INTERGENIC
SBS	Chr6	30297095	T-A	Hetero	INTRON
SBS	Chr7	2013332	A-G	Hetero	INTERGENIC
SBS	Chr7	9103667	G-A	Homo	INTERGENIC
SBS	Chr7	9103669	G-A	Homo	INTERGENIC
SBS	Chr7	9103671	C-A	Homo	INTERGENIC
SBS	Chr7	19307848	A-T	Homo	INTERGENIC
SBS	Chr8	16619798	G-A	Hetero	INTERGENIC
SBS	Chr8	18901226	A-C	Homo	INTRON
SBS	Chr8	23692052	C-T	Hetero	INTERGENIC
SBS	Chr10	13875362	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g084800
SBS	Chr10	16786192	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	18870699	C-T	Homo	INTERGENIC
SBS	Chr11	24327003	T-A	Hetero	INTERGENIC
SBS	Chr11	25486997	G-A	Hetero	INTERGENIC
SBS	Chr12	1803134	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g026900
SBS	Chr12	9691317	A-G	Homo	INTERGENIC
SBS	Chr12	10136170	G-A	Homo	INTRON
SBS	Chr12	22153112	C-T	Hetero	INTRON
SBS	Chr12	23058803	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2850971	2851292	321
Deletion	Chr12	5438205	5438212	7
Deletion	Chr7	12417588	12417590	2	OsKitaake07g111000
Deletion	Chr1	12446106	12446107	1
Deletion	Chr5	15861793	15861794	1
Deletion	Chr12	16425383	16425384	1
Deletion	Chr3	17538124	17538125	1
Deletion	Chr11	18237001	18322000	84999	6
Deletion	Chr7	18771418	18771419	1
Deletion	Chr5	22446514	22446519	5
Deletion	Chr9	22554001	22610000	55999	11
Deletion	Chr12	23893001	23949000	55999	4
Deletion	Chr6	24330653	24330654	1
Deletion	Chr4	30859856	30859857	1
Deletion	Chr3	36371796	36371798	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	8608094	8653831	OsKitaake08g079700
Inversion	Chr8	8608104	8655009	OsKitaake08g079700
Inversion	Chr1	9487769	9586589	OsKitaake01g121600
Inversion	Chr1	9487775	9586587	OsKitaake01g121600
Inversion	Chr12	23893751	24055675
Inversion	Chr12	23948232	24055678

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes