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Mutant Information

Mutant Name	FN942-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN942-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3994610 T-A Hetero INTERGENIC
SBS Chr1 19244908 G-A Homo INTERGENIC
SBS Chr1 25386272 C-A Homo NON_SYNONYMOUS_CODING OsKitaake01g246100
SBS Chr1 38022511 A-T Hetero INTRON
SBS Chr3 11027372 T-G Hetero INTERGENIC
SBS Chr3 15019727 A-G Homo INTRON
SBS Chr3 29278423 A-C Hetero INTRON
SBS Chr4 11361446 G-A Hetero INTERGENIC
SBS Chr4 17736152 A-G Homo INTERGENIC
SBS Chr5 9903786 G-C Homo INTERGENIC
SBS Chr6 18273605 G-A Homo INTERGENIC
SBS Chr7 1677842 G-A Hetero INTERGENIC
SBS Chr7 9302180 A-G Hetero INTERGENIC
SBS Chr7 13503141 G-T Hetero INTERGENIC
SBS Chr7 17047551 T-C Hetero INTRON
SBS Chr9 1809306 C-G Hetero INTERGENIC
SBS Chr10 6138316 G-T Hetero INTERGENIC
SBS Chr10 14220815 C-T Homo INTERGENIC
SBS Chr11 12709957 C-T Homo INTERGENIC
SBS Chr11 20190385 C-T Homo INTERGENIC
SBS Chr12 3224288 T-C Hetero INTERGENIC
SBS Chr12 4598293 T-C Homo INTERGENIC
SBS Chr12 12520758 G-T Hetero INTERGENIC
SBS Chr12 12520759 G-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 763001 827000 63999 25
Deletion Chr9 1775001 1807000 31999 OsKitaake09g009900
Deletion Chr7 2116204 2116214 10
Deletion Chr7 5266428 5266435 7
Deletion Chr12 7035991 7035997 6
Deletion Chr6 7884066 7884068 2
Deletion Chr8 8353839 8353841 2
Deletion Chr1 10570005 10570012 7
Deletion Chr1 12109016 12109020 4
Deletion Chr7 13721001 13730000 8999
Deletion Chr1 23539903 23539904 1
Deletion Chr7 26093463 26093468 5
Deletion Chr2 30182126 30182127 1
Deletion Chr1 31057001 31140000 82999 13
Deletion Chr4 35929001 35935000 5999 OsKitaake04g308300

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10645227 10645230 2
Insertion Chr2 20706817 20706821 3
Insertion Chr5 176980 176987 6
Insertion Chr9 4671008 4671011 2
Insertion Chr11 19899294 19899297 2
Insertion Chr4 18215924 18215926 1
Insertion Chr5 12594783 12594785 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 2544932 Chr6 8905536
Translocation Chr8 2547229 Chr6 8905532
Translocation Chr6 25650230 Chr5 9306034
Translocation Chr6 25650343 Chr5 9305901

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3994610	T-A	Hetero	INTERGENIC
SBS	Chr1	19244908	G-A	Homo	INTERGENIC
SBS	Chr1	25386272	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g246100
SBS	Chr1	38022511	A-T	Hetero	INTRON
SBS	Chr3	11027372	T-G	Hetero	INTERGENIC
SBS	Chr3	15019727	A-G	Homo	INTRON
SBS	Chr3	29278423	A-C	Hetero	INTRON
SBS	Chr4	11361446	G-A	Hetero	INTERGENIC
SBS	Chr4	17736152	A-G	Homo	INTERGENIC
SBS	Chr5	9903786	G-C	Homo	INTERGENIC
SBS	Chr6	18273605	G-A	Homo	INTERGENIC
SBS	Chr7	1677842	G-A	Hetero	INTERGENIC
SBS	Chr7	9302180	A-G	Hetero	INTERGENIC
SBS	Chr7	13503141	G-T	Hetero	INTERGENIC
SBS	Chr7	17047551	T-C	Hetero	INTRON
SBS	Chr9	1809306	C-G	Hetero	INTERGENIC
SBS	Chr10	6138316	G-T	Hetero	INTERGENIC
SBS	Chr10	14220815	C-T	Homo	INTERGENIC
SBS	Chr11	12709957	C-T	Homo	INTERGENIC
SBS	Chr11	20190385	C-T	Homo	INTERGENIC
SBS	Chr12	3224288	T-C	Hetero	INTERGENIC
SBS	Chr12	4598293	T-C	Homo	INTERGENIC
SBS	Chr12	12520758	G-T	Hetero	INTERGENIC
SBS	Chr12	12520759	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	763001	827000	63999	25
Deletion	Chr9	1775001	1807000	31999	OsKitaake09g009900
Deletion	Chr7	2116204	2116214	10
Deletion	Chr7	5266428	5266435	7
Deletion	Chr12	7035991	7035997	6
Deletion	Chr6	7884066	7884068	2
Deletion	Chr8	8353839	8353841	2
Deletion	Chr1	10570005	10570012	7
Deletion	Chr1	12109016	12109020	4
Deletion	Chr7	13721001	13730000	8999
Deletion	Chr1	23539903	23539904	1
Deletion	Chr7	26093463	26093468	5
Deletion	Chr2	30182126	30182127	1
Deletion	Chr1	31057001	31140000	82999	13
Deletion	Chr4	35929001	35935000	5999	OsKitaake04g308300

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2544932	Chr6	8905536
Translocation	Chr8	2547229	Chr6	8905532
Translocation	Chr6	25650230	Chr5	9306034
Translocation	Chr6	25650343	Chr5	9305901

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes