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Mutant Information

Mutant Name	FN943-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN943-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12831016 G-A Hetero INTERGENIC
SBS Chr1 14908560 T-C Hetero INTERGENIC
SBS Chr1 42806381 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g471750
SBS Chr2 5545944 C-G Homo INTERGENIC
SBS Chr3 1541560 G-A Hetero INTERGENIC
SBS Chr3 1541561 C-A Hetero INTERGENIC
SBS Chr3 8280109 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g114200
SBS Chr3 11662235 C-A Hetero INTERGENIC
SBS Chr3 28147618 T-A Homo INTERGENIC
SBS Chr4 1970135 T-C Homo INTERGENIC
SBS Chr4 11528129 C-G Hetero INTERGENIC
SBS Chr4 35951786 T-A Hetero INTERGENIC
SBS Chr5 3957771 C-T Hetero INTERGENIC
SBS Chr5 8377470 G-C Homo INTERGENIC
SBS Chr5 8377471 C-A Homo INTERGENIC
SBS Chr5 27850348 C-T Homo INTERGENIC
SBS Chr6 6600262 T-G Hetero INTERGENIC
SBS Chr6 21382114 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 27510452 C-G Hetero INTERGENIC
SBS Chr7 6772903 C-T Hetero INTERGENIC
SBS Chr7 8532443 G-T Hetero INTERGENIC
SBS Chr7 10404372 G-A Hetero INTERGENIC
SBS Chr7 18810600 C-T Hetero INTRON
SBS Chr8 11789569 G-A Hetero INTERGENIC
SBS Chr8 19343021 C-A Hetero INTERGENIC
SBS Chr9 8310975 G-C Hetero INTERGENIC
SBS Chr9 13726134 G-A Hetero INTERGENIC
SBS Chr9 16097330 A-G Homo INTRON
SBS Chr10 8183057 G-A Hetero INTERGENIC
SBS Chr10 12581460 G-T Hetero INTERGENIC
SBS Chr10 16541698 G-A Hetero INTERGENIC
SBS Chr11 585712 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g007100
SBS Chr11 11167776 C-T Homo INTERGENIC
SBS Chr11 28060163 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 493503 493510 7
Deletion Chr8 6002673 6002675 2
Deletion Chr3 14637001 14777000 139999 26
Deletion Chr4 17361241 17361244 3
Deletion Chr2 18722210 18722212 2
Deletion Chr11 24281887 24281893 6
Deletion Chr11 27216887 27216888 1
Deletion Chr4 32106626 32106627 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36723632 36723635 2
Insertion Chr5 22454662 22454665 2
Insertion Chr7 28346703 28346706 2
Insertion Chr5 11852160 11852162 1
Insertion Chr11 25162046 25162048 1
Insertion Chr12 23333501 23333506 4

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 773862 775639
Inversion Chr8 24300348 24797203
Inversion Chr8 24300349 24797205

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2518602 Chr4 20668284 OsKitaake12g037600
Translocation Chr12 2523817 Chr4 20668288 OsKitaake12g037700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12831016	G-A	Hetero	INTERGENIC
SBS	Chr1	14908560	T-C	Hetero	INTERGENIC
SBS	Chr1	42806381	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g471750
SBS	Chr2	5545944	C-G	Homo	INTERGENIC
SBS	Chr3	1541560	G-A	Hetero	INTERGENIC
SBS	Chr3	1541561	C-A	Hetero	INTERGENIC
SBS	Chr3	8280109	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g114200
SBS	Chr3	11662235	C-A	Hetero	INTERGENIC
SBS	Chr3	28147618	T-A	Homo	INTERGENIC
SBS	Chr4	1970135	T-C	Homo	INTERGENIC
SBS	Chr4	11528129	C-G	Hetero	INTERGENIC
SBS	Chr4	35951786	T-A	Hetero	INTERGENIC
SBS	Chr5	3957771	C-T	Hetero	INTERGENIC
SBS	Chr5	8377470	G-C	Homo	INTERGENIC
SBS	Chr5	8377471	C-A	Homo	INTERGENIC
SBS	Chr5	27850348	C-T	Homo	INTERGENIC
SBS	Chr6	6600262	T-G	Hetero	INTERGENIC
SBS	Chr6	21382114	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	27510452	C-G	Hetero	INTERGENIC
SBS	Chr7	6772903	C-T	Hetero	INTERGENIC
SBS	Chr7	8532443	G-T	Hetero	INTERGENIC
SBS	Chr7	10404372	G-A	Hetero	INTERGENIC
SBS	Chr7	18810600	C-T	Hetero	INTRON
SBS	Chr8	11789569	G-A	Hetero	INTERGENIC
SBS	Chr8	19343021	C-A	Hetero	INTERGENIC
SBS	Chr9	8310975	G-C	Hetero	INTERGENIC
SBS	Chr9	13726134	G-A	Hetero	INTERGENIC
SBS	Chr9	16097330	A-G	Homo	INTRON
SBS	Chr10	8183057	G-A	Hetero	INTERGENIC
SBS	Chr10	12581460	G-T	Hetero	INTERGENIC
SBS	Chr10	16541698	G-A	Hetero	INTERGENIC
SBS	Chr11	585712	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g007100
SBS	Chr11	11167776	C-T	Homo	INTERGENIC
SBS	Chr11	28060163	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	493503	493510	7
Deletion	Chr8	6002673	6002675	2
Deletion	Chr3	14637001	14777000	139999	26
Deletion	Chr4	17361241	17361244	3
Deletion	Chr2	18722210	18722212	2
Deletion	Chr11	24281887	24281893	6
Deletion	Chr11	27216887	27216888	1
Deletion	Chr4	32106626	32106627	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	773862	775639
Inversion	Chr8	24300348	24797203
Inversion	Chr8	24300349	24797205

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes