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Mutant Information

Mutant Name	FN944-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN944-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12695932 G-A Homo INTRON
SBS Chr1 21966438 C-G Homo INTRON
SBS Chr2 9938649 C-A Hetero INTERGENIC
SBS Chr2 32010456 G-A Hetero INTERGENIC
SBS Chr3 1477179 T-A Hetero INTERGENIC
SBS Chr3 2151659 G-A Hetero INTRON
SBS Chr3 7666938 T-C Hetero INTERGENIC
SBS Chr3 20117140 G-A Homo INTERGENIC
SBS Chr4 3292756 G-A Homo INTERGENIC
SBS Chr4 24533018 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g160400
SBS Chr4 29064133 G-T Homo INTERGENIC
SBS Chr4 30184122 C-T Hetero INTERGENIC
SBS Chr4 33249365 G-C Hetero UTR_3_PRIME
SBS Chr5 5010548 G-C Hetero INTERGENIC
SBS Chr5 8836743 A-T Hetero INTRON
SBS Chr5 9114390 G-A Hetero INTERGENIC
SBS Chr5 15398121 G-A Homo INTERGENIC
SBS Chr5 26813422 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g239400
SBS Chr5 26813425 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g239400
SBS Chr5 28856462 A-G Homo INTERGENIC
SBS Chr6 4053359 A-G Hetero INTERGENIC
SBS Chr6 7403216 C-T Hetero INTRON
SBS Chr6 7962025 G-C Hetero INTERGENIC
SBS Chr6 15033247 T-C Hetero INTERGENIC
SBS Chr6 22101115 G-T Hetero INTERGENIC
SBS Chr6 23035985 C-A Hetero INTERGENIC
SBS Chr6 28012337 G-A Homo INTERGENIC
SBS Chr7 5052413 A-T Hetero UTR_3_PRIME
SBS Chr7 7237655 T-A Hetero INTERGENIC
SBS Chr7 18675497 C-T Hetero INTERGENIC
SBS Chr7 21538663 G-T Hetero UTR_3_PRIME
SBS Chr8 5254681 G-A Homo INTERGENIC
SBS Chr8 12301252 C-T Hetero INTERGENIC
SBS Chr8 18058545 C-T Hetero INTERGENIC
SBS Chr8 19472068 A-G Hetero UTR_3_PRIME
SBS Chr8 27196557 G-T Hetero SYNONYMOUS_CODING
SBS Chr8 27196558 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g223100
SBS Chr9 3025716 G-A Hetero INTERGENIC
SBS Chr9 11605417 G-A Hetero INTERGENIC
SBS Chr9 11822317 T-A Hetero INTRON
SBS Chr9 13193322 T-A Hetero INTERGENIC
SBS Chr9 21208161 G-A Hetero INTRON
SBS Chr9 22647259 C-T Hetero INTERGENIC
SBS Chr10 4946084 G-A Homo INTERGENIC
SBS Chr10 7322419 C-T Homo INTERGENIC
SBS Chr11 16683552 A-T Homo UTR_3_PRIME
SBS Chr11 25847739 A-T Hetero INTERGENIC
SBS Chr11 26897835 A-G Hetero INTERGENIC
SBS Chr11 27400303 G-T Hetero INTERGENIC
SBS Chr11 29338406 C-T Hetero INTERGENIC
SBS Chr12 3015063 A-T Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 5357870 5357874 4
Deletion Chr10 6330088 6330089 1
Deletion Chr6 7018001 7221000 202999 24
Deletion Chr1 13386001 13909000 522999 38
Deletion Chr1 13913001 13952000 38999 2
Deletion Chr11 16681978 16681980 2
Deletion Chr2 22195001 22206000 10999 OsKitaake02g215400
Deletion Chr3 31785001 31827000 41999 7
Deletion Chr3 32499038 32499040 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 14135173 14135176 2
Insertion Chr5 27717863 27717866 2
Insertion Chr8 28456327 28456330 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 5273596 6187010 OsKitaake09g036000
Inversion Chr6 7221499 7394938 2
Inversion Chr6 15042329 15080674
Inversion Chr6 15042337 15080693

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 956360 Chr4 25562166 2
Translocation Chr6 956361 Chr4 25572903 2
Translocation Chr4 6366397 Chr1 13388238 OsKitaake04g032100
Translocation Chr6 7017545 Chr4 22700482
Translocation Chr6 7394930 Chr4 22554785 2
Translocation Chr6 14068794 Chr5 24293645
Translocation Chr6 14073060 Chr4 6374178
Translocation Chr5 24293649 Chr4 6370502 OsKitaake04g032100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr1	21966438	C-G	Homo	INTRON
SBS	Chr2	9938649	C-A	Hetero	INTERGENIC
SBS	Chr2	32010456	G-A	Hetero	INTERGENIC
SBS	Chr3	1477179	T-A	Hetero	INTERGENIC
SBS	Chr3	2151659	G-A	Hetero	INTRON
SBS	Chr3	7666938	T-C	Hetero	INTERGENIC
SBS	Chr3	20117140	G-A	Homo	INTERGENIC
SBS	Chr4	3292756	G-A	Homo	INTERGENIC
SBS	Chr4	24533018	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g160400
SBS	Chr4	29064133	G-T	Homo	INTERGENIC
SBS	Chr4	30184122	C-T	Hetero	INTERGENIC
SBS	Chr4	33249365	G-C	Hetero	UTR_3_PRIME
SBS	Chr5	5010548	G-C	Hetero	INTERGENIC
SBS	Chr5	8836743	A-T	Hetero	INTRON
SBS	Chr5	9114390	G-A	Hetero	INTERGENIC
SBS	Chr5	15398121	G-A	Homo	INTERGENIC
SBS	Chr5	26813422	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g239400
SBS	Chr5	26813425	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g239400
SBS	Chr5	28856462	A-G	Homo	INTERGENIC
SBS	Chr6	4053359	A-G	Hetero	INTERGENIC
SBS	Chr6	7403216	C-T	Hetero	INTRON
SBS	Chr6	7962025	G-C	Hetero	INTERGENIC
SBS	Chr6	15033247	T-C	Hetero	INTERGENIC
SBS	Chr6	22101115	G-T	Hetero	INTERGENIC
SBS	Chr6	23035985	C-A	Hetero	INTERGENIC
SBS	Chr6	28012337	G-A	Homo	INTERGENIC
SBS	Chr7	5052413	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	7237655	T-A	Hetero	INTERGENIC
SBS	Chr7	18675497	C-T	Hetero	INTERGENIC
SBS	Chr7	21538663	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	5254681	G-A	Homo	INTERGENIC
SBS	Chr8	12301252	C-T	Hetero	INTERGENIC
SBS	Chr8	18058545	C-T	Hetero	INTERGENIC
SBS	Chr8	19472068	A-G	Hetero	UTR_3_PRIME
SBS	Chr8	27196557	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	27196558	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g223100
SBS	Chr9	3025716	G-A	Hetero	INTERGENIC
SBS	Chr9	11605417	G-A	Hetero	INTERGENIC
SBS	Chr9	11822317	T-A	Hetero	INTRON
SBS	Chr9	13193322	T-A	Hetero	INTERGENIC
SBS	Chr9	21208161	G-A	Hetero	INTRON
SBS	Chr9	22647259	C-T	Hetero	INTERGENIC
SBS	Chr10	4946084	G-A	Homo	INTERGENIC
SBS	Chr10	7322419	C-T	Homo	INTERGENIC
SBS	Chr11	16683552	A-T	Homo	UTR_3_PRIME
SBS	Chr11	25847739	A-T	Hetero	INTERGENIC
SBS	Chr11	26897835	A-G	Hetero	INTERGENIC
SBS	Chr11	27400303	G-T	Hetero	INTERGENIC
SBS	Chr11	29338406	C-T	Hetero	INTERGENIC
SBS	Chr12	3015063	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	5357870	5357874	4
Deletion	Chr10	6330088	6330089	1
Deletion	Chr6	7018001	7221000	202999	24
Deletion	Chr1	13386001	13909000	522999	38
Deletion	Chr1	13913001	13952000	38999	2
Deletion	Chr11	16681978	16681980	2
Deletion	Chr2	22195001	22206000	10999	OsKitaake02g215400
Deletion	Chr3	31785001	31827000	41999	7
Deletion	Chr3	32499038	32499040	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5273596	6187010	OsKitaake09g036000
Inversion	Chr6	7221499	7394938	2
Inversion	Chr6	15042329	15080674
Inversion	Chr6	15042337	15080693

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes