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| Mutant Information |
|---|
| Mutant Name | FN945-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN945-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15648034 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 33910333 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 36104333 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 4601960 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 2292133 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 22876647 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31958872 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 36771876 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13289890 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 20616228 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 27875450 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 29568509 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g226700 |
| SBS | Chr4 | 29568510 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 10804240 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 3754630 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g048200 |
| SBS | Chr7 | 15490157 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19350657 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 28858165 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 16989965 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6809657 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 10394822 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8272338 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 9219034 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 17912397 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 26307031 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13612964 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 13612973 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 17680512 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23899462 | A-T | Hetero | INTERGENIC |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 25208978 | 25208980 | 2 | |
| Deletion | Chr1 | 27960414 | 27960514 | 100 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 34075287 | 34075290 | 2 | |
| Insertion | Chr12 | 5881272 | 5881275 | 2 |