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| Mutant Information |
|---|
| Mutant Name | FN946-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN946-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19778972 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33371448 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 26606619 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 28789581 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 10630871 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11766256 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 29275020 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27352935 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 5417564 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 17467514 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 18848807 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18848808 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 20041795 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20999119 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 22573163 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 29164314 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g253500 |
| SBS | Chr9 | 11031920 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 21042885 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 21995140 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21995141 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7860916 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 13641866 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 24729529 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26189261 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16059145 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18429819 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20728604 | A-G | Hetero | INTRON |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 4821086 | 4821087 | 1 | |
| Deletion | Chr6 | 5878455 | 5878457 | 2 | |
| Deletion | Chr5 | 8953353 | 8953354 | 1 | OsKitaake05g084300 |
| Deletion | Chr1 | 17988658 | 17988843 | 185 | OsKitaake01g182400 |
| Deletion | Chr5 | 22262454 | 22262768 | 314 | OsKitaake05g182000 |
| Deletion | Chr11 | 24696001 | 24727000 | 30999 | OsKitaake11g200450 |
| Deletion | Chr4 | 34829001 | 34881000 | 51999 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 11311732 | 11311735 | 2 | |
| Insertion | Chr6 | 14325535 | 14325593 | 57 | |
| Insertion | Chr9 | 8005391 | 8005393 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 14961568 | 15661565 | 2 |
| Inversion | Chr3 | 14969930 | 15661573 | OsKitaake03g200900 |
| Inversion | Chr11 | 23996895 | 24727408 | OsKitaake11g192800 |
| Inversion | Chr11 | 24245117 | 24502103 | OsKitaake11g197201 |
| Inversion | Chr4 | 33975572 | 34357429 | OsKitaake04g285500 |
| Inversion | Chr4 | 33977212 | 34357441 | OsKitaake04g285500 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 16926 | Chr2 | 17292605 | |
| Translocation | Chr11 | 7805498 | Chr2 | 34224863 | |
| Translocation | Chr5 | 24947037 | Chr2 | 1028875 | |
| Translocation | Chr5 | 24947399 | Chr2 | 1028878 |