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| Mutant Information |
|---|
| Mutant Name | FN947-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN947-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 43
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16465657 | A-T | Homo | INTRON | |
| SBS | Chr1 | 17079683 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 17087135 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29369413 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29615261 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29615262 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 37334759 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 37334763 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 39921856 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16598029 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23171966 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 7940744 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11479140 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 17430939 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 3099785 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 6365338 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18686811 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 18843686 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24033127 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24033128 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13115982 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15124642 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 27737912 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 29701223 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 12890793 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14396634 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6979795 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17213018 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2793099 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 8304827 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 20095702 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 5813553 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g040100 |
| SBS | Chr10 | 7450413 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12334019 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 22262790 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20036662 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 23000304 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 25579186 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6645180 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7076499 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 7437125 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 8493162 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 19051634 | G-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2002001 | 2124000 | 121999 | 6 |
| Deletion | Chr9 | 2129001 | 2292000 | 162999 | 9 |
| Deletion | Chr3 | 3143398 | 3143577 | 179 | |
| Deletion | Chr3 | 6910173 | 6910174 | 1 | |
| Deletion | Chr11 | 8564287 | 8564289 | 2 | |
| Deletion | Chr4 | 10574325 | 10574326 | 1 | |
| Deletion | Chr9 | 11067001 | 11080000 | 12999 | OsKitaake09g069200 |
| Deletion | Chr6 | 12792849 | 12792850 | 1 | |
| Deletion | Chr2 | 15543001 | 15561000 | 17999 | |
| Deletion | Chr6 | 21135126 | 21135127 | 1 | |
| Deletion | Chr3 | 34530370 | 34530372 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 22084898 | 22084901 | 2 | |
| Insertion | Chr6 | 2211286 | 2211291 | 4 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 5236146 | 5283417 | |
| Inversion | Chr8 | 5236152 | 5289925 | |
| Inversion | Chr9 | 11000244 | 11066376 | |
| Inversion | Chr9 | 11000253 | 11078296 | OsKitaake09g069200 |