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| Mutant Information |
|---|
| Mutant Name | FN948-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN948-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15389650 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 30489353 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20527263 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 16588628 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g209700 |
| SBS | Chr4 | 26204078 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 9099850 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 9902697 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 9902698 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11573576 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19729556 | C-T | Homo | INTRON | |
| SBS | Chr6 | 10860942 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20231103 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 3312165 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6337729 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 11082485 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2310152 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 11381171 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12245728 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 18236868 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 18236869 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 137549 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 176095 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 3033849 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 3033851 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 3090496 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 13548480 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 19169654 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 5488081 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11334423 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15995273 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16174925 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16174926 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14686683 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23457303 | C-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 7543806 | 7543818 | 12 | OsKitaake05g075600 |
| Deletion | Chr8 | 8204574 | 8204575 | 1 | |
| Deletion | Chr9 | 8258872 | 8258876 | 4 | |
| Deletion | Chr2 | 9072878 | 9072879 | 1 | |
| Deletion | Chr11 | 9237589 | 9237590 | 1 | |
| Deletion | Chr10 | 15276881 | 15276882 | 1 | |
| Deletion | Chr6 | 15734956 | 15734957 | 1 | |
| Deletion | Chr1 | 16110001 | 16368000 | 257999 | 15 |
| Deletion | Chr2 | 16283309 | 16283311 | 2 | |
| Deletion | Chr12 | 18207759 | 18207767 | 8 | |
| Deletion | Chr6 | 20074368 | 20074369 | 1 | |
| Deletion | Chr7 | 20338154 | 20338163 | 9 | |
| Deletion | Chr11 | 21221001 | 21322000 | 100999 | 4 |
| Deletion | Chr6 | 29298273 | 29298276 | 3 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 10343054 | 10343058 | 3 | |
| Insertion | Chr3 | 4002690 | 4002693 | 2 | |
| Insertion | Chr4 | 12569711 | 12569716 | 4 | |
| Insertion | Chr1 | 17221953 | 17221955 | 1 | |
| Insertion | Chr3 | 22175582 | 22175605 | 22 | OsKitaake03g241635  |
| Insertion | Chr7 | 12005937 | 12005940 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 2690959 | 3669445 | |
| Inversion | Chr10 | 2690966 | 3669449 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 16630348 | Chr2 | 32315153 | |
| Translocation | Chr10 | 16630688 | Chr2 | 32315152 |