Search Kitaake

Mutant Information

Mutant Name	FN949-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN949-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23419452 G-T Homo INTERGENIC
SBS Chr1 24235892 C-T Hetero INTERGENIC
SBS Chr2 10280343 T-A Hetero INTERGENIC
SBS Chr2 11476635 C-T Hetero INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 3745389 A-G Hetero INTERGENIC
SBS Chr4 1314042 C-A Homo INTERGENIC
SBS Chr4 1606536 G-A Homo INTERGENIC
SBS Chr4 6093249 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 14997980 C-G Hetero INTERGENIC
SBS Chr4 16716583 G-T Hetero UTR_3_PRIME
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr4 30881894 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g239600
SBS Chr5 20421967 T-A Hetero INTERGENIC
SBS Chr5 20647020 C-A Hetero INTERGENIC
SBS Chr5 20647021 A-T Hetero INTERGENIC
SBS Chr6 9832468 C-T Hetero INTERGENIC
SBS Chr6 14465309 A-T Hetero INTERGENIC
SBS Chr6 19836266 G-A Hetero INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr7 3095568 G-A Hetero INTERGENIC
SBS Chr8 8779111 C-A Hetero INTERGENIC
SBS Chr8 22537080 T-C Homo SYNONYMOUS_CODING
SBS Chr9 16657745 C-T Hetero INTERGENIC
SBS Chr10 2207183 A-T Hetero INTERGENIC
SBS Chr10 4706884 T-C Hetero INTERGENIC
SBS Chr10 6467790 T-C Hetero INTERGENIC
SBS Chr10 12422844 T-A Hetero INTERGENIC
SBS Chr10 15891953 T-A Hetero INTERGENIC
SBS Chr10 15891954 T-A Hetero INTERGENIC
SBS Chr10 15932838 A-G Hetero INTERGENIC
SBS Chr11 23680667 C-T Hetero INTERGENIC
SBS Chr11 23683089 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 328895 328897 2
Deletion Chr11 6905896 6905897 1 OsKitaake11g079910
Deletion Chr11 11054653 11054655 2
Deletion Chr11 14743001 14813000 69999 4
Deletion Chr1 20969281 20969296 15
Deletion Chr4 22346978 22346996 18
Deletion Chr4 22960536 22960537 1
Deletion Chr3 31197901 31197907 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19680749 19680752 2
Insertion Chr8 22823116 22823118 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 15635190 16193798 2
Inversion Chr9 15635200 16496491 OsKitaake09g110700
Inversion Chr9 16085904 16496482
Inversion Chr1 38598669 38780936 OsKitaake01g415200
Inversion Chr1 38598676 38780933 OsKitaake01g415200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23419452	G-T	Homo	INTERGENIC
SBS	Chr1	24235892	C-T	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Hetero	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	3745389	A-G	Hetero	INTERGENIC
SBS	Chr4	1314042	C-A	Homo	INTERGENIC
SBS	Chr4	1606536	G-A	Homo	INTERGENIC
SBS	Chr4	6093249	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	14997980	C-G	Hetero	INTERGENIC
SBS	Chr4	16716583	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr4	30881894	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g239600
SBS	Chr5	20421967	T-A	Hetero	INTERGENIC
SBS	Chr5	20647020	C-A	Hetero	INTERGENIC
SBS	Chr5	20647021	A-T	Hetero	INTERGENIC
SBS	Chr6	9832468	C-T	Hetero	INTERGENIC
SBS	Chr6	14465309	A-T	Hetero	INTERGENIC
SBS	Chr6	19836266	G-A	Hetero	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr7	3095568	G-A	Hetero	INTERGENIC
SBS	Chr8	8779111	C-A	Hetero	INTERGENIC
SBS	Chr8	22537080	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr9	16657745	C-T	Hetero	INTERGENIC
SBS	Chr10	2207183	A-T	Hetero	INTERGENIC
SBS	Chr10	4706884	T-C	Hetero	INTERGENIC
SBS	Chr10	6467790	T-C	Hetero	INTERGENIC
SBS	Chr10	12422844	T-A	Hetero	INTERGENIC
SBS	Chr10	15891953	T-A	Hetero	INTERGENIC
SBS	Chr10	15891954	T-A	Hetero	INTERGENIC
SBS	Chr10	15932838	A-G	Hetero	INTERGENIC
SBS	Chr11	23680667	C-T	Hetero	INTERGENIC
SBS	Chr11	23683089	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	328895	328897	2
Deletion	Chr11	6905896	6905897	1	OsKitaake11g079910
Deletion	Chr11	11054653	11054655	2
Deletion	Chr11	14743001	14813000	69999	4
Deletion	Chr1	20969281	20969296	15
Deletion	Chr4	22346978	22346996	18
Deletion	Chr4	22960536	22960537	1
Deletion	Chr3	31197901	31197907	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	15635190	16193798	2
Inversion	Chr9	15635200	16496491	OsKitaake09g110700
Inversion	Chr9	16085904	16496482
Inversion	Chr1	38598669	38780936	OsKitaake01g415200
Inversion	Chr1	38598676	38780933	OsKitaake01g415200

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes