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Mutant Information

Mutant Name	FN950-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN950-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4564697	A-G	Homo	INTERGENIC
SBS	Chr1	5910596	A-G	Homo	INTERGENIC
SBS	Chr1	24776149	G-A	Hetero	INTERGENIC
SBS	Chr1	31885353	T-A	Homo	INTRON
SBS	Chr1	41311364	A-C	Homo	INTERGENIC
SBS	Chr2	32478867	T-A	Homo	INTERGENIC
SBS	Chr3	718905	G-C	Hetero	UTR_3_PRIME
SBS	Chr3	8069507	G-T	Homo	INTERGENIC
SBS	Chr3	8069508	A-T	Homo	INTERGENIC
SBS	Chr3	25903397	A-T	Homo	INTERGENIC
SBS	Chr3	32562658	T-G	Homo	INTRON
SBS	Chr4	6417573	A-G	Hetero	INTERGENIC
SBS	Chr4	13501479	G-A	Hetero	INTERGENIC
SBS	Chr4	32149994	G-A	Homo	INTERGENIC
SBS	Chr4	35482188	C-T	Hetero	INTRON
SBS	Chr4	35676953	A-T	Homo	INTERGENIC
SBS	Chr5	1683863	A-T	Homo	INTERGENIC
SBS	Chr5	8031732	G-A	Hetero	INTERGENIC
SBS	Chr5	8503759	C-T	Hetero	INTERGENIC
SBS	Chr5	10751271	A-T	Hetero	INTERGENIC
SBS	Chr5	19931230	C-T	Hetero	INTERGENIC
SBS	Chr5	27558249	G-A	Hetero	INTERGENIC
SBS	Chr6	9685789	G-T	Hetero	INTERGENIC
SBS	Chr6	17782215	G-A	Hetero	INTERGENIC
SBS	Chr6	18437244	T-C	Hetero	INTERGENIC
SBS	Chr6	22106715	G-A	Hetero	INTERGENIC
SBS	Chr6	29633517	C-T	Hetero	INTERGENIC
SBS	Chr7	5345407	C-G	Hetero	INTERGENIC
SBS	Chr7	9962630	A-G	Hetero	INTRON
SBS	Chr8	12733009	G-A	Hetero	INTERGENIC
SBS	Chr8	13825777	A-C	Hetero	INTERGENIC
SBS	Chr8	23492749	A-G	Homo	INTRON
SBS	Chr9	14109564	C-T	Homo	INTRON
SBS	Chr9	15341313	C-T	Hetero	INTERGENIC
SBS	Chr10	6315052	G-A	Hetero	INTERGENIC
SBS	Chr10	6319098	A-T	Hetero	INTERGENIC
SBS	Chr11	21970608	T-C	Hetero	INTERGENIC
SBS	Chr11	22729945	G-A	Hetero	INTERGENIC
SBS	Chr12	7060459	G-A	Hetero	INTERGENIC
SBS	Chr12	10108899	C-A	Hetero	INTERGENIC
SBS	Chr12	10462819	G-A	Hetero	INTERGENIC
SBS	Chr12	12652604	C-G	Hetero	INTERGENIC
SBS	Chr12	13127508	G-A	Hetero	INTERGENIC
SBS	Chr12	16577395	C-T	Hetero	INTERGENIC
SBS	Chr12	17872502	T-A	Hetero	INTERGENIC
SBS	Chr12	18866805	A-T	Hetero	INTERGENIC
SBS	Chr12	23446920	G-A	Hetero	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	56230	56232	2
Deletion	Chr2	1347710	1347712	2
Deletion	Chr12	2762001	2782000	19999	4
Deletion	Chr8	2990043	2990055	12
Deletion	Chr10	10338590	10338712	122
Deletion	Chr4	10518655	10518659	4
Deletion	Chr4	11011298	11011309	11
Deletion	Chr11	11588480	11588482	2
Deletion	Chr11	13817748	13817750	2
Deletion	Chr11	15612660	15612662	2
Deletion	Chr10	19821096	19821099	3
Deletion	Chr2	20550466	20550788	322
Deletion	Chr3	22461585	22461756	171

Insertions: 6

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	4499896	4499900	3
Insertion	Chr4	35489232	35489235	2
Insertion	Chr5	745553	745556	2
Insertion	Chr5	21931272	21931277	4
Insertion	Chr7	19275177	19275180	2
Insertion	Chr7	28907917	28907920	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11952078	12241161	OsKitaake09g080000
Inversion	Chr9	11952085	12242001	OsKitaake09g080000
Inversion	Chr8	23192859	23406913
Inversion	Chr8	23794859	23829813	OsKitaake08g183800
Inversion	Chr8	23794860	23829814	OsKitaake08g183800

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	12241172	Chr8	22856638	OsKitaake09g080000
Translocation	Chr9	12241998	Chr8	22856639	OsKitaake09g080000
Translocation	Chr6	20605547	Chr3	35917056	OsKitaake03g395800
Translocation	Chr6	20605976	Chr3	35874412

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