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| Mutant Information |
|---|
| Mutant Name | FN952-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN952-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5219059 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g068108 |
| SBS | Chr1 | 29078078 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 29078079 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 29078080 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 36651524 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 42722689 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 42722691 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 1677879 | G-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr2 | 24905766 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 1523801 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9910227 | C-A | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 14356006 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 5764938 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 3398573 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 15015976 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18500642 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 22599197 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24390283 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 331941 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15206322 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15603100 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16965949 | T-A | Homo | INTRON | |
| SBS | Chr6 | 20626325 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 27282170 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1362690 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 7452496 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 1180484 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1180485 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1180486 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7033944 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g046700 |
| SBS | Chr11 | 5408784 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 14402449 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17980008 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 21302147 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5104939 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 23479987 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 25949079 | C-T | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 2405314 | 2405316 | 2 | |
| Deletion | Chr7 | 4682721 | 4682722 | 1 | |
| Deletion | Chr4 | 6391343 | 6391346 | 3 | |
| Deletion | Chr5 | 7764124 | 7764127 | 3 | |
| Deletion | Chr5 | 8111210 | 8111218 | 8 | |
| Deletion | Chr1 | 11569861 | 11570023 | 162 | |
| Deletion | Chr8 | 13593782 | 13593783 | 1 | |
| Deletion | Chr4 | 14269551 | 14269556 | 5 | |
| Deletion | Chr1 | 28181504 | 28181513 | 9 | |
| Deletion | Chr4 | 29014692 | 29014693 | 1 | OsKitaake04g218800 |
| Deletion | Chr1 | 30539476 | 30539482 | 6 | |
| Deletion | Chr1 | 37127115 | 37127117 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 20811901 | 20811904 | 2 | |
| Insertion | Chr3 | 32855385 | 32855388 | 2 | |
| Insertion | Chr5 | 26489965 | 26489968 | 2 | |
| Insertion | Chr1 | 17274995 | 17274997 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 4122353 | 4130497 | OsKitaake10g031400 |
| Inversion | Chr10 | 4122373 | 4130509 | OsKitaake10g031400 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 3645285 | Chr1 | 42766086 | 2 |
| Translocation | Chr2 | 3645290 | Chr1 | 42766729 | 2 |
| Translocation | Chr10 | 4514771 | Chr1 | 42746183 | 2 |