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| Mutant Information |
|---|
| Mutant Name | FN953-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN953-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9557385 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 12292205 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 14526085 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g164950 |
| SBS | Chr1 | 19131261 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 26002127 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 27273143 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 38017995 | C-T | Homo | INTRON | |
| SBS | Chr2 | 16397059 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 31230975 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 1494880 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 6301371 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14039932 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 27919804 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9204699 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 21834908 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 5490534 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 8663779 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 26004223 | G-A | Hetero | START_GAINED | |
| SBS | Chr8 | 4507519 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12378262 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 351827 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 351828 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7357639 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12347069 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 4916830 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10280454 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16324337 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21361044 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 29547541 | A-C | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 265257 | 265260 | 3 | |
| Deletion | Chr7 | 4843453 | 4843456 | 3 | |
| Deletion | Chr5 | 5704852 | 5704856 | 4 | |
| Deletion | Chr1 | 10116955 | 10116956 | 1 | |
| Deletion | Chr10 | 12610295 | 12610309 | 14 | |
| Deletion | Chr12 | 14206341 | 14206342 | 1 | |
| Deletion | Chr12 | 15796853 | 15796862 | 9 | |
| Deletion | Chr9 | 19636810 | 19636812 | 2 | |
| Deletion | Chr6 | 20553534 | 20553536 | 2 | |
| Deletion | Chr7 | 21068586 | 21068603 | 17 | |
| Deletion | Chr11 | 22998879 | 22998882 | 3 | |
| Deletion | Chr10 | 23262682 | 23262686 | 4 | |
| Deletion | Chr12 | 23490309 | 23490314 | 5 | |
| Deletion | Chr7 | 23843602 | 23843603 | 1 | |
| Deletion | Chr5 | 27613611 | 27613619 | 8 | OsKitaake05g252000 |
| Deletion | Chr2 | 29010024 | 29010029 | 5 | |
| Deletion | Chr6 | 29947693 | 29947694 | 1 | |
| Deletion | Chr1 | 39982266 | 39982268 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 8493493 | 8493496 | 2 | |
| Insertion | Chr3 | 33392738 | 33392740 | 1 | |
| Insertion | Chr7 | 8498072 | 8498074 | 1 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 17277404 | 17739563 | OsKitaake08g132600 |
| Inversion | Chr1 | 19157883 | 19302105 | |
| Inversion | Chr1 | 19157896 | 19302105 | |
| Inversion | Chr5 | 25140618 | 25254447 | |
| Inversion | Chr5 | 25140626 | 25254453 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 9905818 | Chr4 | 14825925 | OsKitaake06g114900 |