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Mutant Information

Mutant Name	FN955-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN955-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4036769 T-G Hetero INTERGENIC
SBS Chr1 18084951 C-A Homo INTERGENIC
SBS Chr1 28059120 T-C Homo INTERGENIC
SBS Chr1 41833256 T-A Hetero INTRON
SBS Chr1 42070801 C-A Hetero INTERGENIC
SBS Chr2 4057321 T-C Hetero INTERGENIC
SBS Chr2 14874260 C-T Homo INTERGENIC
SBS Chr2 14874261 G-A Homo INTERGENIC
SBS Chr2 19792581 C-A Hetero INTERGENIC
SBS Chr4 11933541 T-A Hetero INTERGENIC
SBS Chr5 10095864 G-A Hetero INTERGENIC
SBS Chr5 18154067 A-G Homo INTRON
SBS Chr5 18170680 A-C Homo INTERGENIC
SBS Chr5 30007574 G-T Homo INTERGENIC
SBS Chr7 16809545 C-T Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 3747193 G-A Hetero INTERGENIC
SBS Chr8 28854541 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g249100
SBS Chr8 29298491 C-A Hetero INTERGENIC
SBS Chr9 3878927 T-A Homo INTERGENIC
SBS Chr9 8279362 A-T Homo INTERGENIC
SBS Chr9 15690898 G-T Homo INTRON
SBS Chr10 10589509 G-A Homo INTERGENIC
SBS Chr11 27323334 C-A Hetero INTERGENIC
SBS Chr12 3848357 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g053100
SBS Chr12 17206260 C-T Homo INTERGENIC
SBS Chr12 22577641 A-T Homo UTR_3_PRIME

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 88291 88645 354
Deletion Chr10 3684334 3684343 9
Deletion Chr8 6510479 6510480 1
Deletion Chr8 8631248 8631249 1
Deletion Chr1 14838009 14838015 6
Deletion Chr11 17877001 17896000 18999
Deletion Chr5 18467001 18475000 7999
Deletion Chr11 20138634 20138731 97
Deletion Chr10 23167652 23167660 8
Deletion Chr1 25545141 25545146 5
Deletion Chr12 27023519 27023840 321
Deletion Chr3 35181793 35181794 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 39913062 39913065 2
Insertion Chr9 14860235 14860238 2
Insertion Chr9 16216687 16216691 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 7903702 8706052 OsKitaake08g080200
Inversion Chr2 14851906 15330251

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 5225704 Chr2 13027759 OsKitaake04g025400
Translocation Chr4 5225710 Chr2 13028103 OsKitaake04g025400
Translocation Chr5 19756495 Chr3 32026144 OsKitaake05g156800
Translocation Chr5 19756677 Chr3 32027804 OsKitaake05g156800
Translocation Chr8 28384352 Chr2 13028766
Translocation Chr8 28384359 Chr2 13028105

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4036769	T-G	Hetero	INTERGENIC
SBS	Chr1	18084951	C-A	Homo	INTERGENIC
SBS	Chr1	28059120	T-C	Homo	INTERGENIC
SBS	Chr1	41833256	T-A	Hetero	INTRON
SBS	Chr1	42070801	C-A	Hetero	INTERGENIC
SBS	Chr2	4057321	T-C	Hetero	INTERGENIC
SBS	Chr2	14874260	C-T	Homo	INTERGENIC
SBS	Chr2	14874261	G-A	Homo	INTERGENIC
SBS	Chr2	19792581	C-A	Hetero	INTERGENIC
SBS	Chr4	11933541	T-A	Hetero	INTERGENIC
SBS	Chr5	10095864	G-A	Hetero	INTERGENIC
SBS	Chr5	18154067	A-G	Homo	INTRON
SBS	Chr5	18170680	A-C	Homo	INTERGENIC
SBS	Chr5	30007574	G-T	Homo	INTERGENIC
SBS	Chr7	16809545	C-T	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	3747193	G-A	Hetero	INTERGENIC
SBS	Chr8	28854541	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g249100
SBS	Chr8	29298491	C-A	Hetero	INTERGENIC
SBS	Chr9	3878927	T-A	Homo	INTERGENIC
SBS	Chr9	8279362	A-T	Homo	INTERGENIC
SBS	Chr9	15690898	G-T	Homo	INTRON
SBS	Chr10	10589509	G-A	Homo	INTERGENIC
SBS	Chr11	27323334	C-A	Hetero	INTERGENIC
SBS	Chr12	3848357	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g053100
SBS	Chr12	17206260	C-T	Homo	INTERGENIC
SBS	Chr12	22577641	A-T	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	88291	88645	354
Deletion	Chr10	3684334	3684343	9
Deletion	Chr8	6510479	6510480	1
Deletion	Chr8	8631248	8631249	1
Deletion	Chr1	14838009	14838015	6
Deletion	Chr11	17877001	17896000	18999
Deletion	Chr5	18467001	18475000	7999
Deletion	Chr11	20138634	20138731	97
Deletion	Chr10	23167652	23167660	8
Deletion	Chr1	25545141	25545146	5
Deletion	Chr12	27023519	27023840	321
Deletion	Chr3	35181793	35181794	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	7903702	8706052	OsKitaake08g080200
Inversion	Chr2	14851906	15330251

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes