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Mutant Information

Mutant Name	FN956-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN956-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1121843 G-T Homo INTERGENIC
SBS Chr1 6690233 C-T Hetero UTR_3_PRIME
SBS Chr1 30418258 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g300850
SBS Chr1 38234258 A-G Hetero INTERGENIC
SBS Chr2 19306422 C-T Hetero INTERGENIC
SBS Chr2 31150009 G-A Hetero INTRON
SBS Chr2 34503947 G-A Hetero INTERGENIC
SBS Chr3 14018452 C-T Hetero INTERGENIC
SBS Chr3 14311635 T-C Hetero INTRON
SBS Chr4 7562244 C-A Hetero INTERGENIC
SBS Chr4 21315981 C-T Homo INTERGENIC
SBS Chr4 22572850 G-A Homo INTRON
SBS Chr4 22572851 G-C Homo INTRON
SBS Chr4 30265223 T-C Hetero INTERGENIC
SBS Chr5 5662163 A-T Hetero INTRON
SBS Chr6 4078336 G-C Hetero INTERGENIC
SBS Chr6 7105260 C-A Homo INTERGENIC
SBS Chr6 12534280 A-C Homo INTERGENIC
SBS Chr6 19690583 T-G Hetero INTERGENIC
SBS Chr6 30643864 A-T Hetero INTERGENIC
SBS Chr7 1703875 A-C Hetero INTRON
SBS Chr7 7765173 G-A Hetero INTERGENIC
SBS Chr7 14728074 A-G Hetero INTERGENIC
SBS Chr7 26984318 G-A Hetero INTERGENIC
SBS Chr8 6704379 T-C Hetero INTERGENIC
SBS Chr8 14976934 T-A Homo INTERGENIC
SBS Chr8 23022364 T-A Hetero INTERGENIC
SBS Chr9 14633294 G-T Homo NON_SYNONYMOUS_CODING OsKitaake09g099900
SBS Chr10 893414 C-T Homo INTERGENIC
SBS Chr10 5219140 C-T Hetero INTERGENIC
SBS Chr10 8818967 C-T Homo INTERGENIC
SBS Chr10 13165178 A-G Homo INTERGENIC
SBS Chr12 7667097 G-T Homo INTRON
SBS Chr12 21838281 C-A Homo INTRON

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4282001 4292000 9999 2
Deletion Chr6 15583336 15583340 4
Deletion Chr3 19051610 19051619 9
Deletion Chr11 20807019 20807030 11
Deletion Chr7 26120274 26120276 2
Deletion Chr8 27866933 27866937 4 OsKitaake08g233200

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 7057848 7057851 2
Insertion Chr1 9692959 9692961 1
Insertion Chr5 12464015 12464017 1
Insertion Chr5 17866340 17866344 3
Insertion Chr7 11984659 11984661 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 30026539 30449271 2
Inversion Chr1 30026541 30449290 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 6102364 Chr1 39294445 OsKitaake01g422500
Translocation Chr8 6103773 Chr1 39294450 OsKitaake01g422500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1121843	G-T	Homo	INTERGENIC
SBS	Chr1	6690233	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	30418258	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g300850
SBS	Chr1	38234258	A-G	Hetero	INTERGENIC
SBS	Chr2	19306422	C-T	Hetero	INTERGENIC
SBS	Chr2	31150009	G-A	Hetero	INTRON
SBS	Chr2	34503947	G-A	Hetero	INTERGENIC
SBS	Chr3	14018452	C-T	Hetero	INTERGENIC
SBS	Chr3	14311635	T-C	Hetero	INTRON
SBS	Chr4	7562244	C-A	Hetero	INTERGENIC
SBS	Chr4	21315981	C-T	Homo	INTERGENIC
SBS	Chr4	22572850	G-A	Homo	INTRON
SBS	Chr4	22572851	G-C	Homo	INTRON
SBS	Chr4	30265223	T-C	Hetero	INTERGENIC
SBS	Chr5	5662163	A-T	Hetero	INTRON
SBS	Chr6	4078336	G-C	Hetero	INTERGENIC
SBS	Chr6	7105260	C-A	Homo	INTERGENIC
SBS	Chr6	12534280	A-C	Homo	INTERGENIC
SBS	Chr6	19690583	T-G	Hetero	INTERGENIC
SBS	Chr6	30643864	A-T	Hetero	INTERGENIC
SBS	Chr7	1703875	A-C	Hetero	INTRON
SBS	Chr7	7765173	G-A	Hetero	INTERGENIC
SBS	Chr7	14728074	A-G	Hetero	INTERGENIC
SBS	Chr7	26984318	G-A	Hetero	INTERGENIC
SBS	Chr8	6704379	T-C	Hetero	INTERGENIC
SBS	Chr8	14976934	T-A	Homo	INTERGENIC
SBS	Chr8	23022364	T-A	Hetero	INTERGENIC
SBS	Chr9	14633294	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g099900
SBS	Chr10	893414	C-T	Homo	INTERGENIC
SBS	Chr10	5219140	C-T	Hetero	INTERGENIC
SBS	Chr10	8818967	C-T	Homo	INTERGENIC
SBS	Chr10	13165178	A-G	Homo	INTERGENIC
SBS	Chr12	7667097	G-T	Homo	INTRON
SBS	Chr12	21838281	C-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4282001	4292000	9999	2
Deletion	Chr6	15583336	15583340	4
Deletion	Chr3	19051610	19051619	9
Deletion	Chr11	20807019	20807030	11
Deletion	Chr7	26120274	26120276	2
Deletion	Chr8	27866933	27866937	4	OsKitaake08g233200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	30026539	30449271	2
Inversion	Chr1	30026541	30449290	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes