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Mutant Information |
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Mutant Name | FN959-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN959-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 44
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 5577912 | T-C | Homo | INTERGENIC | |
SBS | Chr1 | 5577980 | A-T | Homo | INTERGENIC | |
SBS | Chr1 | 10780923 | A-T | Homo | INTERGENIC | |
SBS | Chr1 | 13544698 | G-C | Homo | INTERGENIC | |
SBS | Chr1 | 15883510 | C-G | Hetero | INTERGENIC | |
SBS | Chr1 | 17893141 | C-A | Hetero | INTERGENIC | |
SBS | Chr1 | 25275155 | A-T | Hetero | INTERGENIC | |
SBS | Chr1 | 31460075 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g315700 |
SBS | Chr1 | 31460076 | C-T | Hetero | SYNONYMOUS_CODING | |
SBS | Chr1 | 41810294 | T-C | Hetero | UTR_3_PRIME | |
SBS | Chr1 | 42610354 | C-T | Hetero | INTRON | |
SBS | Chr2 | 6564234 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g089100 |
SBS | Chr2 | 6564235 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g089100 |
SBS | Chr2 | 33994056 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 17698766 | G-T | Hetero | INTERGENIC | |
SBS | Chr3 | 19276341 | A-T | Hetero | INTERGENIC | |
SBS | Chr3 | 19276342 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 23605065 | T-C | Hetero | UTR_3_PRIME | |
SBS | Chr4 | 11644417 | T-C | Homo | INTERGENIC | |
SBS | Chr4 | 13673673 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 20380061 | G-C | Hetero | INTERGENIC | |
SBS | Chr4 | 22903574 | C-A | Hetero | INTERGENIC | |
SBS | Chr4 | 22903575 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 34472724 | T-C | Hetero | INTERGENIC | |
SBS | Chr5 | 9392372 | T-G | Hetero | INTERGENIC | |
SBS | Chr5 | 20562615 | C-G | Hetero | INTERGENIC | |
SBS | Chr5 | 28776653 | A-T | Hetero | INTERGENIC | |
SBS | Chr6 | 23781483 | T-A | Homo | INTRON | |
SBS | Chr6 | 25651468 | C-T | Homo | INTERGENIC | |
SBS | Chr7 | 3310814 | A-G | Hetero | INTERGENIC | |
SBS | Chr7 | 7810614 | A-C | Homo | INTERGENIC | |
SBS | Chr7 | 12299611 | C-T | Homo | SYNONYMOUS_CODING | |
SBS | Chr7 | 25758933 | C-G | Homo | UTR_3_PRIME | |
SBS | Chr7 | 28839349 | A-T | Hetero | INTRON | |
SBS | Chr8 | 17411304 | A-G | Hetero | INTERGENIC | |
SBS | Chr9 | 5399641 | G-T | Homo | INTRON | |
SBS | Chr9 | 14459657 | G-A | Homo | INTERGENIC | |
SBS | Chr9 | 18676611 | G-C | Hetero | SYNONYMOUS_CODING | |
SBS | Chr10 | 22159666 | T-C | Hetero | UTR_3_PRIME | |
SBS | Chr11 | 11796137 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 21392373 | C-T | Hetero | INTERGENIC | |
SBS | Chr12 | 5400018 | C-A | Homo | INTERGENIC | |
SBS | Chr12 | 9860332 | G-T | Homo | INTERGENIC | |
SBS | Chr12 | 12311544 | G-C | Hetero | INTERGENIC |
Deletions: 11
Insertions: 5
Inversions: 8
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr8 | 524222 | 524786 | OsKitaake08g007500 |
Inversion | Chr8 | 2624446 | 2916303 | |
Inversion | Chr8 | 2624467 | 2916307 | |
Inversion | Chr12 | 9720213 | 9915028 | |
Inversion | Chr3 | 15339155 | 15554607 | |
Inversion | Chr3 | 15339163 | 15550481 | |
Inversion | Chr8 | 16767637 | 16767888 | OsKitaake08g128100 |
Inversion | Chr11 | 20093430 | 20093692 | OsKitaake11g157385 |