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Mutant Information 

Mutant NameFN959-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN959-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr15577912T-CHomoINTERGENIC
SBS  Chr15577980A-THomoINTERGENIC
SBS  Chr110780923A-THomoINTERGENIC
SBS  Chr113544698G-CHomoINTERGENIC
SBS  Chr115883510C-GHeteroINTERGENIC
SBS  Chr117893141C-AHeteroINTERGENIC
SBS  Chr125275155A-THeteroINTERGENIC
SBS  Chr131460075G-AHeteroNON_SYNONYMOUS_CODINGOsKitaake01g315700
SBS  Chr131460076C-THeteroSYNONYMOUS_CODING
SBS  Chr141810294T-CHeteroUTR_3_PRIME
SBS  Chr142610354C-THeteroINTRON
SBS  Chr26564234A-THomoNON_SYNONYMOUS_CODINGOsKitaake02g089100
SBS  Chr26564235G-THomoNON_SYNONYMOUS_CODINGOsKitaake02g089100
SBS  Chr233994056C-THomoINTERGENIC
SBS  Chr317698766G-THeteroINTERGENIC
SBS  Chr319276341A-THeteroINTERGENIC
SBS  Chr319276342C-THeteroINTERGENIC
SBS  Chr323605065T-CHeteroUTR_3_PRIME
SBS  Chr411644417T-CHomoINTERGENIC
SBS  Chr413673673G-AHomoINTERGENIC
SBS  Chr420380061G-CHeteroINTERGENIC
SBS  Chr422903574C-AHeteroINTERGENIC
SBS  Chr422903575G-AHeteroINTERGENIC
SBS  Chr434472724T-CHeteroINTERGENIC
SBS  Chr59392372T-GHeteroINTERGENIC
SBS  Chr520562615C-GHeteroINTERGENIC
SBS  Chr528776653A-THeteroINTERGENIC
SBS  Chr623781483T-AHomoINTRON
SBS  Chr625651468C-THomoINTERGENIC
SBS  Chr73310814A-GHeteroINTERGENIC
SBS  Chr77810614A-CHomoINTERGENIC
SBS  Chr712299611C-THomoSYNONYMOUS_CODING
SBS  Chr725758933C-GHomoUTR_3_PRIME
SBS  Chr728839349A-THeteroINTRON
SBS  Chr817411304A-GHeteroINTERGENIC
SBS  Chr95399641G-THomoINTRON
SBS  Chr914459657G-AHomoINTERGENIC
SBS  Chr918676611G-CHeteroSYNONYMOUS_CODING
SBS  Chr1022159666T-CHeteroUTR_3_PRIME
SBS  Chr1111796137G-AHeteroINTERGENIC
SBS  Chr1121392373C-THeteroINTERGENIC
SBS  Chr125400018C-AHomoINTERGENIC
SBS  Chr129860332G-THomoINTERGENIC
SBS  Chr1212311544G-CHeteroINTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr75478553547856512
Deletion  Chr4878013387801407
Deletion  Chr710389072103890731
Deletion  Chr311437464114374739
Deletion  Chr613095793130958007
Deletion  Chr1222605856226058659
Deletion  Chr325002236250022448
Deletion  Chr525446100254461066
Deletion  Chr426372409263724123
Deletion  Chr430049308300493135
Deletion  Chr436463062364630653

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr111646799116468022
Insertion  Chr143431302434313107
Insertion  Chr629178543291785451
Insertion  Chr726244382262443874
Insertion  Chr1118640591186405942

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr8524222524786OsKitaake08g007500
Inversion  Chr826244462916303
Inversion  Chr826244672916307
Inversion  Chr1297202139915028
Inversion  Chr31533915515554607
Inversion  Chr31533916315550481
Inversion  Chr81676763716767888OsKitaake08g128100
Inversion  Chr112009343020093692OsKitaake11g157385