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Mutant Information

Mutant Name	FN960-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN960-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28926420 G-A Homo INTERGENIC
SBS Chr2 10152077 T-A Hetero INTERGENIC
SBS Chr2 31126006 G-T Homo INTRON
SBS Chr3 12238235 T-C Hetero INTERGENIC
SBS Chr3 33319756 G-A Homo INTRON
SBS Chr3 37130691 C-A Hetero INTERGENIC
SBS Chr4 20970154 G-T Hetero INTERGENIC
SBS Chr4 21543294 C-T Hetero INTERGENIC
SBS Chr4 32926494 G-T Homo INTERGENIC
SBS Chr4 35951786 T-A Hetero INTERGENIC
SBS Chr5 12474848 C-T Homo INTERGENIC
SBS Chr5 19953588 C-A Hetero INTERGENIC
SBS Chr6 7338032 G-A Hetero INTRON
SBS Chr7 6772903 C-T Homo INTERGENIC
SBS Chr7 15941269 G-A Hetero UTR_3_PRIME
SBS Chr7 20862078 G-A Hetero INTERGENIC
SBS Chr7 20862079 C-G Hetero INTERGENIC
SBS Chr7 25506613 A-T Homo INTERGENIC
SBS Chr8 24637066 G-T Hetero INTERGENIC
SBS Chr8 28769710 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g247401
SBS Chr8 28769714 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g247401
SBS Chr9 19881404 T-A Hetero INTRON
SBS Chr10 9604267 G-C Hetero INTERGENIC
SBS Chr11 7503052 G-T Homo INTERGENIC
SBS Chr11 17666491 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g138500
SBS Chr12 17405331 T-C Homo INTERGENIC
SBS Chr12 26826734 C-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1797791 1797794 3 OsKitaake12g026700
Deletion Chr5 2934844 2934845 1
Deletion Chr10 4231436 4231562 126
Deletion Chr12 4974489 4974490 1
Deletion Chr8 6002673 6002675 2
Deletion Chr8 6739526 6739612 86
Deletion Chr11 6917957 6917978 21
Deletion Chr10 10203767 10203877 110
Deletion Chr12 11718018 11718183 165
Deletion Chr5 15429295 15429297 2
Deletion Chr8 17624566 17624568 2
Deletion Chr9 19472131 19472140 9
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000
Deletion Chr4 33085491 33085500 9
Deletion Chr1 35385906 35385907 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27872045 27872049 3
Insertion Chr1 36723632 36723635 2
Insertion Chr9 16141056 16141059 2
Insertion Chr10 21606690 21606696 5
Insertion Chr11 3638398 3638403 4
Insertion Chr11 19043975 19043978 2
Insertion Chr3 20050183 20050185 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 12390963 12714108
Inversion Chr2 16443372 16486605
Inversion Chr2 16443538 16488409

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 18364014 Chr2 34890024

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28926420	G-A	Homo	INTERGENIC
SBS	Chr2	10152077	T-A	Hetero	INTERGENIC
SBS	Chr2	31126006	G-T	Homo	INTRON
SBS	Chr3	12238235	T-C	Hetero	INTERGENIC
SBS	Chr3	33319756	G-A	Homo	INTRON
SBS	Chr3	37130691	C-A	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Hetero	INTERGENIC
SBS	Chr4	21543294	C-T	Hetero	INTERGENIC
SBS	Chr4	32926494	G-T	Homo	INTERGENIC
SBS	Chr4	35951786	T-A	Hetero	INTERGENIC
SBS	Chr5	12474848	C-T	Homo	INTERGENIC
SBS	Chr5	19953588	C-A	Hetero	INTERGENIC
SBS	Chr6	7338032	G-A	Hetero	INTRON
SBS	Chr7	6772903	C-T	Homo	INTERGENIC
SBS	Chr7	15941269	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	20862078	G-A	Hetero	INTERGENIC
SBS	Chr7	20862079	C-G	Hetero	INTERGENIC
SBS	Chr7	25506613	A-T	Homo	INTERGENIC
SBS	Chr8	24637066	G-T	Hetero	INTERGENIC
SBS	Chr8	28769710	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g247401
SBS	Chr8	28769714	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g247401
SBS	Chr9	19881404	T-A	Hetero	INTRON
SBS	Chr10	9604267	G-C	Hetero	INTERGENIC
SBS	Chr11	7503052	G-T	Homo	INTERGENIC
SBS	Chr11	17666491	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g138500
SBS	Chr12	17405331	T-C	Homo	INTERGENIC
SBS	Chr12	26826734	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1797791	1797794	3	OsKitaake12g026700
Deletion	Chr5	2934844	2934845	1
Deletion	Chr10	4231436	4231562	126
Deletion	Chr12	4974489	4974490	1
Deletion	Chr8	6002673	6002675	2
Deletion	Chr8	6739526	6739612	86
Deletion	Chr11	6917957	6917978	21
Deletion	Chr10	10203767	10203877	110
Deletion	Chr12	11718018	11718183	165
Deletion	Chr5	15429295	15429297	2
Deletion	Chr8	17624566	17624568	2
Deletion	Chr9	19472131	19472140	9
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000
Deletion	Chr4	33085491	33085500	9
Deletion	Chr1	35385906	35385907	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	12390963	12714108
Inversion	Chr2	16443372	16486605
Inversion	Chr2	16443538	16488409

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes