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Mutant Information

Mutant Name	FN961-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN961-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 290275 T-C Hetero INTERGENIC
SBS Chr1 6385311 G-C Hetero INTRON
SBS Chr1 10975748 C-G Hetero INTERGENIC
SBS Chr1 10981697 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g134900
SBS Chr1 13866289 C-G Hetero INTERGENIC
SBS Chr1 29917601 C-T Hetero INTRON
SBS Chr1 31040851 A-T Hetero INTERGENIC
SBS Chr1 31040853 G-C Hetero INTERGENIC
SBS Chr2 27022244 T-G Hetero INTERGENIC
SBS Chr3 9006770 A-G Hetero INTERGENIC
SBS Chr3 20448324 C-T Hetero INTERGENIC
SBS Chr3 26922823 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g180500
SBS Chr3 33253645 A-T Homo INTERGENIC
SBS Chr4 6328986 C-T Hetero INTRON
SBS Chr4 6720830 T-C Hetero INTERGENIC
SBS Chr4 10709513 A-G Hetero INTERGENIC
SBS Chr4 10943418 C-T Hetero INTERGENIC
SBS Chr4 17727078 T-G Hetero SPLICE_SITE_REGION
SBS Chr4 24852057 G-T Hetero INTERGENIC
SBS Chr4 30001690 A-G Homo INTRON
SBS Chr5 15968517 G-C Homo INTERGENIC
SBS Chr5 26343898 A-G Hetero SYNONYMOUS_CODING
SBS Chr6 14304796 A-T Hetero INTERGENIC
SBS Chr6 18462946 C-T Hetero INTERGENIC
SBS Chr6 24005560 G-T Hetero INTERGENIC
SBS Chr7 10500171 C-T Hetero INTERGENIC
SBS Chr7 18924593 T-C Homo INTERGENIC
SBS Chr7 19037345 C-T Homo INTERGENIC
SBS Chr7 23931437 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g211100
SBS Chr7 23972006 T-G Homo UTR_5_PRIME
SBS Chr8 516072 G-C Homo INTERGENIC
SBS Chr8 9023869 C-T Homo INTERGENIC
SBS Chr8 9398459 G-A Hetero INTERGENIC
SBS Chr9 6852803 G-A Homo INTERGENIC
SBS Chr9 11440262 T-C Hetero INTERGENIC
SBS Chr9 12177296 G-T Hetero INTERGENIC
SBS Chr10 6894063 T-C Homo INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr11 11637825 A-T Homo INTERGENIC
SBS Chr12 11283262 A-G Homo INTERGENIC
SBS Chr12 15121699 G-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 969929 969931 2
Deletion Chr2 5924170 5924189 19
Deletion Chr8 10683908 10683912 4
Deletion Chr11 11414678 11414681 3
Deletion Chr7 13726001 13730000 3999
Deletion Chr5 14046724 14046734 10
Deletion Chr9 15079001 15090000 10999 2
Deletion Chr9 15174333 15174334 1
Deletion Chr4 35698643 35698645 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27305047 27305050 2
Insertion Chr10 15560454 15560456 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 15078538 15093010
Inversion Chr9 15089805 15093039
Inversion Chr11 26870297 26896958 OsKitaake11g218500
Inversion Chr11 26870322 26896966 OsKitaake11g218500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 17036423 Chr1 11275670 OsKitaake01g138300
Translocation Chr6 17036454 Chr1 11274123

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	290275	T-C	Hetero	INTERGENIC
SBS	Chr1	6385311	G-C	Hetero	INTRON
SBS	Chr1	10975748	C-G	Hetero	INTERGENIC
SBS	Chr1	10981697	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g134900
SBS	Chr1	13866289	C-G	Hetero	INTERGENIC
SBS	Chr1	29917601	C-T	Hetero	INTRON
SBS	Chr1	31040851	A-T	Hetero	INTERGENIC
SBS	Chr1	31040853	G-C	Hetero	INTERGENIC
SBS	Chr2	27022244	T-G	Hetero	INTERGENIC
SBS	Chr3	9006770	A-G	Hetero	INTERGENIC
SBS	Chr3	20448324	C-T	Hetero	INTERGENIC
SBS	Chr3	26922823	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g180500
SBS	Chr3	33253645	A-T	Homo	INTERGENIC
SBS	Chr4	6328986	C-T	Hetero	INTRON
SBS	Chr4	6720830	T-C	Hetero	INTERGENIC
SBS	Chr4	10709513	A-G	Hetero	INTERGENIC
SBS	Chr4	10943418	C-T	Hetero	INTERGENIC
SBS	Chr4	17727078	T-G	Hetero	SPLICE_SITE_REGION
SBS	Chr4	24852057	G-T	Hetero	INTERGENIC
SBS	Chr4	30001690	A-G	Homo	INTRON
SBS	Chr5	15968517	G-C	Homo	INTERGENIC
SBS	Chr5	26343898	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr6	14304796	A-T	Hetero	INTERGENIC
SBS	Chr6	18462946	C-T	Hetero	INTERGENIC
SBS	Chr6	24005560	G-T	Hetero	INTERGENIC
SBS	Chr7	10500171	C-T	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Homo	INTERGENIC
SBS	Chr7	19037345	C-T	Homo	INTERGENIC
SBS	Chr7	23931437	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g211100
SBS	Chr7	23972006	T-G	Homo	UTR_5_PRIME
SBS	Chr8	516072	G-C	Homo	INTERGENIC
SBS	Chr8	9023869	C-T	Homo	INTERGENIC
SBS	Chr8	9398459	G-A	Hetero	INTERGENIC
SBS	Chr9	6852803	G-A	Homo	INTERGENIC
SBS	Chr9	11440262	T-C	Hetero	INTERGENIC
SBS	Chr9	12177296	G-T	Hetero	INTERGENIC
SBS	Chr10	6894063	T-C	Homo	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr11	11637825	A-T	Homo	INTERGENIC
SBS	Chr12	11283262	A-G	Homo	INTERGENIC
SBS	Chr12	15121699	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	969929	969931	2
Deletion	Chr2	5924170	5924189	19
Deletion	Chr8	10683908	10683912	4
Deletion	Chr11	11414678	11414681	3
Deletion	Chr7	13726001	13730000	3999
Deletion	Chr5	14046724	14046734	10
Deletion	Chr9	15079001	15090000	10999	2
Deletion	Chr9	15174333	15174334	1
Deletion	Chr4	35698643	35698645	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	15078538	15093010
Inversion	Chr9	15089805	15093039
Inversion	Chr11	26870297	26896958	OsKitaake11g218500
Inversion	Chr11	26870322	26896966	OsKitaake11g218500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes