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Mutant Information |
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Mutant Name | FN962-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN962-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 7736909 | C-A | Homo | INTERGENIC | |
SBS | Chr1 | 11856115 | T-A | Homo | INTRON | |
SBS | Chr1 | 30431432 | A-T | Hetero | INTERGENIC | |
SBS | Chr1 | 41075233 | C-T | Hetero | INTERGENIC | |
SBS | Chr2 | 711363 | A-G | Homo | INTRON | |
SBS | Chr2 | 15346007 | G-A | Hetero | INTERGENIC | |
SBS | Chr2 | 18696628 | A-T | Hetero | INTRON | |
SBS | Chr3 | 10351099 | G-A | Hetero | INTERGENIC | |
SBS | Chr3 | 21409187 | C-A | Homo | INTERGENIC | |
SBS | Chr4 | 20498206 | C-T | Hetero | INTRON | |
SBS | Chr4 | 20498207 | C-T | Hetero | INTRON | |
SBS | Chr4 | 24755226 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g163200 |
SBS | Chr5 | 13439417 | T-A | Hetero | INTRON | |
SBS | Chr5 | 13439418 | G-A | Hetero | INTRON | |
SBS | Chr5 | 15856275 | T-A | Hetero | INTERGENIC | |
SBS | Chr5 | 20421189 | T-C | Homo | INTERGENIC | |
SBS | Chr6 | 5518695 | T-G | Hetero | INTERGENIC | |
SBS | Chr6 | 8771157 | T-G | Hetero | INTERGENIC | |
SBS | Chr6 | 12288295 | C-A | Hetero | INTERGENIC | |
SBS | Chr6 | 17884691 | G-T | Homo | INTERGENIC | |
SBS | Chr6 | 22280287 | C-T | Homo | INTERGENIC | |
SBS | Chr7 | 7494021 | G-A | Homo | INTERGENIC | |
SBS | Chr7 | 11297448 | A-C | Hetero | INTERGENIC | |
SBS | Chr8 | 21676567 | G-A | Homo | INTERGENIC | |
SBS | Chr9 | 13032527 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 1769587 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g024400 |
SBS | Chr11 | 10706489 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 15800022 | C-G | Homo | UTR_3_PRIME | |
SBS | Chr11 | 21789550 | G-T | Hetero | INTERGENIC | |
SBS | Chr11 | 22387985 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 1394656 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g020800 |
SBS | Chr12 | 2606637 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 4087971 | A-G | Homo | INTERGENIC | |
SBS | Chr12 | 12432117 | C-T | Hetero | INTERGENIC | |
SBS | Chr12 | 18766028 | C-A | Hetero | INTERGENIC | |
SBS | Chr12 | 25610355 | A-C | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr10 | 2040045 | 2040047 | 2 | |
Deletion | Chr8 | 2849702 | 2849716 | 14 | |
Deletion | Chr3 | 3947402 | 3947404 | 2 | |
Deletion | Chr2 | 4304238 | 4304244 | 6 | |
Deletion | Chr3 | 5122245 | 5122246 | 1 | |
Deletion | Chr4 | 6382449 | 6382450 | 1 | |
Deletion | Chr6 | 7063001 | 7101000 | 37999 | 3 |
Deletion | Chr2 | 10216098 | 10216100 | 2 | |
Deletion | Chr3 | 12745089 | 12745096 | 7 | |
Deletion | Chr7 | 14030617 | 14030818 | 201 | OsKitaake07g121100 |
Deletion | Chr10 | 18269914 | 18269925 | 11 | |
Deletion | Chr5 | 20870967 | 20870971 | 4 | |
Deletion | Chr11 | 26556814 | 26556815 | 1 | |
Deletion | Chr8 | 27499177 | 27499180 | 3 | |
Deletion | Chr1 | 28202999 | 28203001 | 2 | |
Deletion | Chr5 | 28915607 | 28915609 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr1 | 36424500 | 36424503 | 2 | |
Insertion | Chr11 | 7050357 | 7050362 | 4 | |
Insertion | Chr2 | 27446171 | 27446176 | 4 | OsKitaake02g275800 ![]() |