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Mutant Information 

Mutant NameFN962-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN962-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr17736909C-AHomoINTERGENIC
SBS  Chr111856115T-AHomoINTRON
SBS  Chr130431432A-THeteroINTERGENIC
SBS  Chr141075233C-THeteroINTERGENIC
SBS  Chr2711363A-GHomoINTRON
SBS  Chr215346007G-AHeteroINTERGENIC
SBS  Chr218696628A-THeteroINTRON
SBS  Chr310351099G-AHeteroINTERGENIC
SBS  Chr321409187C-AHomoINTERGENIC
SBS  Chr420498206C-THeteroINTRON
SBS  Chr420498207C-THeteroINTRON
SBS  Chr424755226G-CHomoNON_SYNONYMOUS_CODINGOsKitaake04g163200
SBS  Chr513439417T-AHeteroINTRON
SBS  Chr513439418G-AHeteroINTRON
SBS  Chr515856275T-AHeteroINTERGENIC
SBS  Chr520421189T-CHomoINTERGENIC
SBS  Chr65518695T-GHeteroINTERGENIC
SBS  Chr68771157T-GHeteroINTERGENIC
SBS  Chr612288295C-AHeteroINTERGENIC
SBS  Chr617884691G-THomoINTERGENIC
SBS  Chr622280287C-THomoINTERGENIC
SBS  Chr77494021G-AHomoINTERGENIC
SBS  Chr711297448A-CHeteroINTERGENIC
SBS  Chr821676567G-AHomoINTERGENIC
SBS  Chr913032527G-AHomoINTERGENIC
SBS  Chr111769587A-GHomoNON_SYNONYMOUS_CODINGOsKitaake11g024400
SBS  Chr1110706489G-AHeteroINTERGENIC
SBS  Chr1115800022C-GHomoUTR_3_PRIME
SBS  Chr1121789550G-THeteroINTERGENIC
SBS  Chr1122387985G-AHeteroINTERGENIC
SBS  Chr121394656G-AHeteroNON_SYNONYMOUS_CODINGOsKitaake12g020800
SBS  Chr122606637G-AHeteroINTERGENIC
SBS  Chr124087971A-GHomoINTERGENIC
SBS  Chr1212432117C-THeteroINTERGENIC
SBS  Chr1218766028C-AHeteroINTERGENIC
SBS  Chr1225610355A-CHeteroINTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr10204004520400472
Deletion  Chr82849702284971614
Deletion  Chr3394740239474042
Deletion  Chr2430423843042446
Deletion  Chr3512224551222461
Deletion  Chr4638244963824501
Deletion  Chr670630017101000379993
Deletion  Chr210216098102161002
Deletion  Chr312745089127450967
Deletion  Chr71403061714030818201OsKitaake07g121100
Deletion  Chr10182699141826992511
Deletion  Chr520870967208709714
Deletion  Chr1126556814265568151
Deletion  Chr827499177274991803
Deletion  Chr128202999282030012
Deletion  Chr528915607289156092

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr136424500364245032
Insertion  Chr11705035770503624
Insertion  Chr227446171274461764OsKitaake02g275800 image