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Mutant Information

Mutant Name	FN963-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN963-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16193659 G-A Hetero INTERGENIC
SBS Chr1 18874431 G-C Hetero INTERGENIC
SBS Chr1 24251208 A-T Homo INTERGENIC
SBS Chr2 1728832 A-T Hetero INTERGENIC
SBS Chr2 1728839 T-A Hetero INTERGENIC
SBS Chr2 4112130 G-T Hetero UTR_3_PRIME
SBS Chr2 8203218 T-C Homo INTERGENIC
SBS Chr2 15860052 G-T Homo INTERGENIC
SBS Chr2 34254894 A-T Homo INTERGENIC
SBS Chr3 18741983 A-T Homo INTRON
SBS Chr3 18741985 A-T Homo INTRON
SBS Chr3 25134462 C-T Homo INTERGENIC
SBS Chr4 17102271 C-T Homo INTERGENIC
SBS Chr4 20788059 G-C Homo UTR_5_PRIME
SBS Chr5 170446 T-A Homo INTRON
SBS Chr5 170447 T-A Homo INTRON
SBS Chr5 170455 T-A Homo INTRON
SBS Chr5 20595486 T-C Homo INTERGENIC
SBS Chr5 23776896 A-T Homo SPLICE_SITE_ACCEPTOR OsKitaake05g208600
SBS Chr5 23776897 G-T Homo SPLICE_SITE_ACCEPTOR OsKitaake05g208600
SBS Chr6 671437 C-A Hetero INTRON
SBS Chr6 13938358 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 13938359 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g145200
SBS Chr8 22630719 C-T Hetero INTRON
SBS Chr8 25338666 C-T Homo INTERGENIC
SBS Chr8 25941661 G-A Homo INTERGENIC
SBS Chr9 7126634 T-A Homo INTERGENIC
SBS Chr9 7590797 C-G Homo INTERGENIC
SBS Chr10 2568132 C-T Homo INTERGENIC
SBS Chr10 13868963 C-T Homo INTRON
SBS Chr11 17521329 C-G Hetero INTERGENIC
SBS Chr11 23466044 T-A Hetero INTERGENIC
SBS Chr11 24449500 G-A Hetero INTERGENIC
SBS Chr12 13098557 T-A Hetero INTERGENIC
SBS Chr12 13721405 A-T Hetero INTERGENIC
SBS Chr12 17668884 T-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 822001 834000 11999 2
Deletion Chr6 3982192 3982195 3 OsKitaake06g055600
Deletion Chr8 6269242 6269423 181
Deletion Chr1 6414410 6414418 8
Deletion Chr1 8818457 8818459 2
Deletion Chr2 16544445 16544447 2
Deletion Chr11 17557096 17557098 2
Deletion Chr3 18761549 18761550 1
Deletion Chr2 20097666 20097670 4
Deletion Chr4 20956687 20956704 17
Deletion Chr12 22774832 22774915 83
Deletion Chr1 22857228 22857229 1
Deletion Chr4 27652801 27652806 5
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr2 36153297 36153305 8
Deletion Chr1 42152604 42152605 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22816492 22816495 2
Insertion Chr8 21322688 21322691 2
Insertion Chr10 10606822 10606825 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 693352 1441367 2
Inversion Chr6 822404 1441239 OsKitaake06g016500
Inversion Chr12 14426564 14496897
Inversion Chr12 14426571 14496903

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 16206243 Chr4 20750857

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16193659	G-A	Hetero	INTERGENIC
SBS	Chr1	18874431	G-C	Hetero	INTERGENIC
SBS	Chr1	24251208	A-T	Homo	INTERGENIC
SBS	Chr2	1728832	A-T	Hetero	INTERGENIC
SBS	Chr2	1728839	T-A	Hetero	INTERGENIC
SBS	Chr2	4112130	G-T	Hetero	UTR_3_PRIME
SBS	Chr2	8203218	T-C	Homo	INTERGENIC
SBS	Chr2	15860052	G-T	Homo	INTERGENIC
SBS	Chr2	34254894	A-T	Homo	INTERGENIC
SBS	Chr3	18741983	A-T	Homo	INTRON
SBS	Chr3	18741985	A-T	Homo	INTRON
SBS	Chr3	25134462	C-T	Homo	INTERGENIC
SBS	Chr4	17102271	C-T	Homo	INTERGENIC
SBS	Chr4	20788059	G-C	Homo	UTR_5_PRIME
SBS	Chr5	170446	T-A	Homo	INTRON
SBS	Chr5	170447	T-A	Homo	INTRON
SBS	Chr5	170455	T-A	Homo	INTRON
SBS	Chr5	20595486	T-C	Homo	INTERGENIC
SBS	Chr5	23776896	A-T	Homo	SPLICE_SITE_ACCEPTOR	OsKitaake05g208600
SBS	Chr5	23776897	G-T	Homo	SPLICE_SITE_ACCEPTOR	OsKitaake05g208600
SBS	Chr6	671437	C-A	Hetero	INTRON
SBS	Chr6	13938358	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	13938359	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g145200
SBS	Chr8	22630719	C-T	Hetero	INTRON
SBS	Chr8	25338666	C-T	Homo	INTERGENIC
SBS	Chr8	25941661	G-A	Homo	INTERGENIC
SBS	Chr9	7126634	T-A	Homo	INTERGENIC
SBS	Chr9	7590797	C-G	Homo	INTERGENIC
SBS	Chr10	2568132	C-T	Homo	INTERGENIC
SBS	Chr10	13868963	C-T	Homo	INTRON
SBS	Chr11	17521329	C-G	Hetero	INTERGENIC
SBS	Chr11	23466044	T-A	Hetero	INTERGENIC
SBS	Chr11	24449500	G-A	Hetero	INTERGENIC
SBS	Chr12	13098557	T-A	Hetero	INTERGENIC
SBS	Chr12	13721405	A-T	Hetero	INTERGENIC
SBS	Chr12	17668884	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	822001	834000	11999	2
Deletion	Chr6	3982192	3982195	3	OsKitaake06g055600
Deletion	Chr8	6269242	6269423	181
Deletion	Chr1	6414410	6414418	8
Deletion	Chr1	8818457	8818459	2
Deletion	Chr2	16544445	16544447	2
Deletion	Chr11	17557096	17557098	2
Deletion	Chr3	18761549	18761550	1
Deletion	Chr2	20097666	20097670	4
Deletion	Chr4	20956687	20956704	17
Deletion	Chr12	22774832	22774915	83
Deletion	Chr1	22857228	22857229	1
Deletion	Chr4	27652801	27652806	5
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr2	36153297	36153305	8
Deletion	Chr1	42152604	42152605	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	693352	1441367	2
Inversion	Chr6	822404	1441239	OsKitaake06g016500
Inversion	Chr12	14426564	14496897
Inversion	Chr12	14426571	14496903

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes