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Mutant Information |
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Mutant Name | FN964-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN964-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 117557 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 6059682 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 13373378 | T-C | Hetero | INTERGENIC | |
SBS | Chr1 | 23130842 | A-G | Hetero | INTERGENIC | |
SBS | Chr1 | 28933514 | G-T | Hetero | UTR_3_PRIME | |
SBS | Chr1 | 32135253 | T-C | Hetero | INTERGENIC | |
SBS | Chr1 | 36271442 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 43013015 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 780109 | A-C | Hetero | INTRON | |
SBS | Chr3 | 18252737 | G-T | Hetero | INTERGENIC | |
SBS | Chr4 | 2545466 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 2670910 | G-T | Homo | INTERGENIC | |
SBS | Chr4 | 4284884 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 4284885 | C-A | Homo | INTERGENIC | |
SBS | Chr4 | 5050295 | C-T | Homo | INTERGENIC | |
SBS | Chr4 | 14074651 | C-T | Hetero | INTERGENIC | |
SBS | Chr5 | 29057642 | C-G | Homo | INTERGENIC | |
SBS | Chr5 | 30171029 | G-A | Hetero | INTERGENIC | |
SBS | Chr6 | 9016365 | G-A | Hetero | INTERGENIC | |
SBS | Chr6 | 11428402 | C-A | Hetero | INTERGENIC | |
SBS | Chr6 | 26574246 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 21180123 | G-C | Homo | INTERGENIC | |
SBS | Chr7 | 28407188 | G-T | Homo | INTERGENIC | |
SBS | Chr8 | 972129 | G-A | Hetero | INTERGENIC | |
SBS | Chr8 | 4948008 | A-G | Hetero | INTERGENIC | |
SBS | Chr8 | 8716387 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g080400 |
SBS | Chr8 | 10224834 | G-T | Hetero | INTERGENIC | |
SBS | Chr8 | 26583943 | G-A | Homo | INTRON | |
SBS | Chr9 | 2069073 | T-C | Hetero | INTERGENIC | |
SBS | Chr9 | 18625971 | G-C | Hetero | INTERGENIC | |
SBS | Chr10 | 3621373 | C-A | Hetero | INTERGENIC | |
SBS | Chr10 | 5811779 | G-A | Homo | INTRON | |
SBS | Chr10 | 17134248 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 19671249 | G-T | Homo | INTERGENIC | |
SBS | Chr11 | 10348467 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 15566111 | G-A | Homo | INTERGENIC | |
SBS | Chr12 | 11251426 | C-T | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr4 | 4877582 | 4877591 | 9 | |
Deletion | Chr4 | 10248875 | 10248876 | 1 | |
Deletion | Chr9 | 10960057 | 10960061 | 4 | |
Deletion | Chr1 | 12097496 | 12097499 | 3 | |
Deletion | Chr9 | 12117751 | 12117753 | 2 | |
Deletion | Chr8 | 12807026 | 12807027 | 1 | |
Deletion | Chr6 | 21824001 | 21834000 | 9999 | OsKitaake06g192400 |
Deletion | Chr3 | 23199152 | 23199161 | 9 |
Insertions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr1 | 41454179 | 41454182 | 2 | |
Insertion | Chr10 | 3211417 | 3211420 | 2 | |
Insertion | Chr3 | 22175582 | 22175605 | 22 | OsKitaake03g241635 ![]() |
Insertion | Chr4 | 10335753 | 10335755 | 1 | |
Insertion | Chr4 | 16499886 | 16499888 | 1 | OsKitaake04g080300 ![]() |
Insertion | Chr5 | 16011110 | 16011112 | 1 | |
Insertion | Chr5 | 17866340 | 17866344 | 3 | |
Insertion | Chr5 | 30232136 | 30232144 | 7 | |
Insertion | Chr12 | 11676793 | 11676795 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr8 | 17682490 | 18265547 | OsKitaake08g136000 |
Inversion | Chr8 | 17682500 | 18265547 | OsKitaake08g136000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr11 | 13931056 | Chr10 | 8624148 | |
Translocation | Chr11 | 18113096 | Chr9 | 502441 |