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Mutant Information 

Mutant NameFN964-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN964-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr1117557C-THeteroINTERGENIC
SBS  Chr16059682C-THeteroINTERGENIC
SBS  Chr113373378T-CHeteroINTERGENIC
SBS  Chr123130842A-GHeteroINTERGENIC
SBS  Chr128933514G-THeteroUTR_3_PRIME
SBS  Chr132135253T-CHeteroINTERGENIC
SBS  Chr136271442C-THeteroINTERGENIC
SBS  Chr143013015C-THeteroINTERGENIC
SBS  Chr3780109A-CHeteroINTRON
SBS  Chr318252737G-THeteroINTERGENIC
SBS  Chr42545466G-AHomoINTERGENIC
SBS  Chr42670910G-THomoINTERGENIC
SBS  Chr44284884G-AHomoINTERGENIC
SBS  Chr44284885C-AHomoINTERGENIC
SBS  Chr45050295C-THomoINTERGENIC
SBS  Chr414074651C-THeteroINTERGENIC
SBS  Chr529057642C-GHomoINTERGENIC
SBS  Chr530171029G-AHeteroINTERGENIC
SBS  Chr69016365G-AHeteroINTERGENIC
SBS  Chr611428402C-AHeteroINTERGENIC
SBS  Chr626574246G-AHeteroINTERGENIC
SBS  Chr721180123G-CHomoINTERGENIC
SBS  Chr728407188G-THomoINTERGENIC
SBS  Chr8972129G-AHeteroINTERGENIC
SBS  Chr84948008A-GHeteroINTERGENIC
SBS  Chr88716387T-CHeteroNON_SYNONYMOUS_CODINGOsKitaake08g080400
SBS  Chr810224834G-THeteroINTERGENIC
SBS  Chr826583943G-AHomoINTRON
SBS  Chr92069073T-CHeteroINTERGENIC
SBS  Chr918625971G-CHeteroINTERGENIC
SBS  Chr103621373C-AHeteroINTERGENIC
SBS  Chr105811779G-AHomoINTRON
SBS  Chr1017134248G-AHeteroINTERGENIC
SBS  Chr1019671249G-THomoINTERGENIC
SBS  Chr1110348467G-AHeteroINTERGENIC
SBS  Chr1115566111G-AHomoINTERGENIC
SBS  Chr1211251426C-THeteroINTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr4487758248775919
Deletion  Chr410248875102488761
Deletion  Chr910960057109600614
Deletion  Chr112097496120974993
Deletion  Chr912117751121177532
Deletion  Chr812807026128070271
Deletion  Chr621824001218340009999OsKitaake06g192400
Deletion  Chr323199152231991619

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr141454179414541822
Insertion  Chr10321141732114202
Insertion  Chr3221755822217560522OsKitaake03g241635 image
Insertion  Chr410335753103357551
Insertion  Chr416499886164998881OsKitaake04g080300 image
Insertion  Chr516011110160111121
Insertion  Chr517866340178663443
Insertion  Chr530232136302321447
Insertion  Chr1211676793116767951

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr81768249018265547OsKitaake08g136000
Inversion  Chr81768250018265547OsKitaake08g136000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr1113931056Chr108624148
Translocation  Chr1118113096Chr9502441