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| Mutant Information |
|---|
| Mutant Name | FN967-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN967-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11051952 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 13850423 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 14351179 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 29670456 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 37238302 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 37238313 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 38859286 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 44002684 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g490600 |
| SBS | Chr2 | 4775057 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 4813350 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 13648898 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 22227414 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 23984619 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24275601 | G-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 29412582 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 8089610 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 12899764 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16463598 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 10786545 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 6031018 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 17888201 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26005822 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6377546 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5154103 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 11305226 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 12332207 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 12332208 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 8102983 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9569780 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13739090 | C-G | Hetero | INTRON | |
| SBS | Chr10 | 18760018 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 21563205 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 22906318 | G-A | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1188033 | 1188041 | 8 | |
| Deletion | Chr12 | 1263468 | 1263469 | 1 | |
| Deletion | Chr3 | 1901965 | 1901967 | 2 | |
| Deletion | Chr10 | 8269928 | 8269930 | 2 | |
| Deletion | Chr1 | 12869783 | 12869786 | 3 | |
| Deletion | Chr9 | 13433959 | 13433960 | 1 | |
| Deletion | Chr12 | 14870001 | 14911000 | 40999 | OsKitaake12g118000 |
| Deletion | Chr3 | 30447486 | 30447487 | 1 | |
| Deletion | Chr6 | 30648155 | 30648160 | 5 | OsKitaake06g289100 |
| Deletion | Chr3 | 32390662 | 32390672 | 10 | OsKitaake03g343000 |
| Deletion | Chr4 | 32700628 | 32700636 | 8 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 3852245 | 3852248 | 2 | |
| Insertion | Chr4 | 22704928 | 22704930 | 1 | OsKitaake04g135000  |
| Insertion | Chr8 | 28603862 | 28603865 | 2 | |
| Insertion | Chr11 | 26692277 | 26692280 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 5113098 | 5562037 | OsKitaake04g027200 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 21682794 | Chr3 | 30754841 | OsKitaake12g169900 |
| Translocation | Chr12 | 21683093 | Chr3 | 30754828 | OsKitaake12g169900 |