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Mutant Information

Mutant Name	FN968-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN968-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 305234 T-G Hetero INTRON
SBS Chr2 32650400 T-A Homo INTRON
SBS Chr4 13327745 G-A Homo INTERGENIC
SBS Chr4 36119606 C-A Homo INTERGENIC
SBS Chr6 1671419 G-A Hetero INTERGENIC
SBS Chr6 1671420 G-A Hetero INTERGENIC
SBS Chr6 14912305 G-A Hetero INTERGENIC
SBS Chr6 17287692 T-A Hetero INTRON
SBS Chr6 20444222 C-T Hetero INTERGENIC
SBS Chr7 357357 T-C Hetero INTERGENIC
SBS Chr7 19543194 G-A Homo INTERGENIC
SBS Chr7 28429174 G-A Hetero INTERGENIC
SBS Chr7 29218679 C-T Hetero INTERGENIC
SBS Chr8 9129853 C-G Hetero INTERGENIC
SBS Chr9 10915377 G-T Homo INTERGENIC
SBS Chr10 99297 C-T Hetero INTERGENIC
SBS Chr10 4548752 C-T Homo INTERGENIC
SBS Chr10 10334141 C-T Hetero INTERGENIC
SBS Chr10 13116794 C-T Hetero INTERGENIC
SBS Chr11 3588788 C-T Hetero INTRON
SBS Chr11 19965666 A-G Hetero INTERGENIC
SBS Chr11 26429701 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 660985 C-T Homo INTRON
SBS Chr12 1583279 G-A Hetero INTERGENIC
SBS Chr12 21570259 C-A Homo INTERGENIC
SBS Chr12 21814755 C-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 62771 63478 707
Deletion Chr7 4450763 4450772 9
Deletion Chr11 4936846 4936853 7
Deletion Chr2 7842321 7842330 9
Deletion Chr1 8136532 8136540 8
Deletion Chr7 8460303 8460304 1
Deletion Chr9 11651362 11651363 1
Deletion Chr3 12253289 12253298 9
Deletion Chr3 13659259 13659260 1
Deletion Chr6 16824140 16824142 2
Deletion Chr1 17359708 17359710 2
Deletion Chr4 18701518 18701519 1
Deletion Chr11 18747991 18747994 3
Deletion Chr10 19844164 19844167 3
Deletion Chr7 23471502 23471519 17
Deletion Chr2 29584251 29584253 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 22057522 22057524 1
Insertion Chr9 3057509 3057512 2
Insertion Chr10 11980450 11980453 2
Insertion Chr10 20245590 20245593 2
Insertion Chr6 9943 9975 31

Inversions: 12

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 15649320 16017352
Inversion Chr7 15649828 16017354
Inversion Chr10 18074741 18196302 OsKitaake10g128600
Inversion Chr10 18074746 18104584 OsKitaake10g127405
Inversion Chr10 18104579 18306463 OsKitaake10g127405
Inversion Chr10 18196312 18692044 2
Inversion Chr11 21418438 22154958 OsKitaake11g169251
Inversion Chr11 21957256 22154953 OsKitaake11g173800
Inversion Chr6 25876329 26032151 2
Inversion Chr6 25876336 26032153 2
Inversion Chr11 28063579 28185595 OsKitaake11g230400
Inversion Chr11 28185602 28246305

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 15299884 Chr1 1514334
Translocation Chr10 18685059 Chr3 29285009 2
Translocation Chr10 18692042 Chr3 29285001 2
Translocation Chr6 25033695 Chr2 20090030
Translocation Chr6 25034821 Chr2 20090027

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	305234	T-G	Hetero	INTRON
SBS	Chr2	32650400	T-A	Homo	INTRON
SBS	Chr4	13327745	G-A	Homo	INTERGENIC
SBS	Chr4	36119606	C-A	Homo	INTERGENIC
SBS	Chr6	1671419	G-A	Hetero	INTERGENIC
SBS	Chr6	1671420	G-A	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Hetero	INTERGENIC
SBS	Chr6	17287692	T-A	Hetero	INTRON
SBS	Chr6	20444222	C-T	Hetero	INTERGENIC
SBS	Chr7	357357	T-C	Hetero	INTERGENIC
SBS	Chr7	19543194	G-A	Homo	INTERGENIC
SBS	Chr7	28429174	G-A	Hetero	INTERGENIC
SBS	Chr7	29218679	C-T	Hetero	INTERGENIC
SBS	Chr8	9129853	C-G	Hetero	INTERGENIC
SBS	Chr9	10915377	G-T	Homo	INTERGENIC
SBS	Chr10	99297	C-T	Hetero	INTERGENIC
SBS	Chr10	4548752	C-T	Homo	INTERGENIC
SBS	Chr10	10334141	C-T	Hetero	INTERGENIC
SBS	Chr10	13116794	C-T	Hetero	INTERGENIC
SBS	Chr11	3588788	C-T	Hetero	INTRON
SBS	Chr11	19965666	A-G	Hetero	INTERGENIC
SBS	Chr11	26429701	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	660985	C-T	Homo	INTRON
SBS	Chr12	1583279	G-A	Hetero	INTERGENIC
SBS	Chr12	21570259	C-A	Homo	INTERGENIC
SBS	Chr12	21814755	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	62771	63478	707
Deletion	Chr7	4450763	4450772	9
Deletion	Chr11	4936846	4936853	7
Deletion	Chr2	7842321	7842330	9
Deletion	Chr1	8136532	8136540	8
Deletion	Chr7	8460303	8460304	1
Deletion	Chr9	11651362	11651363	1
Deletion	Chr3	12253289	12253298	9
Deletion	Chr3	13659259	13659260	1
Deletion	Chr6	16824140	16824142	2
Deletion	Chr1	17359708	17359710	2
Deletion	Chr4	18701518	18701519	1
Deletion	Chr11	18747991	18747994	3
Deletion	Chr10	19844164	19844167	3
Deletion	Chr7	23471502	23471519	17
Deletion	Chr2	29584251	29584253	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15649320	16017352
Inversion	Chr7	15649828	16017354
Inversion	Chr10	18074741	18196302	OsKitaake10g128600
Inversion	Chr10	18074746	18104584	OsKitaake10g127405
Inversion	Chr10	18104579	18306463	OsKitaake10g127405
Inversion	Chr10	18196312	18692044	2
Inversion	Chr11	21418438	22154958	OsKitaake11g169251
Inversion	Chr11	21957256	22154953	OsKitaake11g173800
Inversion	Chr6	25876329	26032151	2
Inversion	Chr6	25876336	26032153	2
Inversion	Chr11	28063579	28185595	OsKitaake11g230400
Inversion	Chr11	28185602	28246305

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes