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| Mutant Information |
|---|
| Mutant Name | FN969-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN969-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26841507 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 30863271 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g306200 |
| SBS | Chr1 | 33002779 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 33085113 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g337600 |
| SBS | Chr2 | 19758654 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 21377678 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 32390695 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 3740107 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g052300 |
| SBS | Chr3 | 10721634 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 10721635 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23791540 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29138032 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 2280757 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 15373438 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 24711404 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17230815 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17753227 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 1370985 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 3553717 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 18458406 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 20895457 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 30584177 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 20479073 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 23974697 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17140415 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11089532 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11960885 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20170841 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20770558 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 27538897 | G-A | Hetero | SPLICE_SITE_DONOR | OsKitaake11g224600 |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3032224 | 3032390 | 166 | OsKitaake05g035600 |
| Deletion | Chr7 | 3863810 | 3863811 | 1 | |
| Deletion | Chr8 | 7841050 | 7841051 | 1 | |
| Deletion | Chr3 | 9555257 | 9555258 | 1 | |
| Deletion | Chr5 | 17348721 | 17348726 | 5 | OsKitaake05g133100 |
| Deletion | Chr7 | 28218552 | 28218561 | 9 | OsKitaake07g266500 |
| Deletion | Chr7 | 28864679 | 28864687 | 8 | |
| Deletion | Chr2 | 33253680 | 33253681 | 1 | OsKitaake02g342200 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 35360528 | 35360531 | 2 | |
| Insertion | Chr5 | 13240544 | 13240547 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 6381930 | 6576367 | OsKitaake06g083300 |
| Inversion | Chr6 | 6576376 | 6649039 | OsKitaake06g087000 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 20623460 | Chr2 | 25288903 |