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Mutant Information

Mutant Name	FN970-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN970-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10115870 C-T Hetero INTERGENIC
SBS Chr1 12166171 G-T Hetero INTERGENIC
SBS Chr1 23869398 C-A Hetero INTERGENIC
SBS Chr1 23869399 C-T Hetero INTERGENIC
SBS Chr1 27972823 C-A Hetero INTERGENIC
SBS Chr2 21806726 A-G Hetero INTERGENIC
SBS Chr2 23021775 C-A Hetero INTERGENIC
SBS Chr3 24094268 A-C Homo INTERGENIC
SBS Chr4 2424903 C-T Hetero INTRON
SBS Chr4 2424908 T-A Hetero INTRON
SBS Chr4 36765370 C-A Hetero INTERGENIC
SBS Chr7 10142694 A-C Hetero INTERGENIC
SBS Chr8 1331471 G-A Hetero INTERGENIC
SBS Chr9 3396805 C-T Hetero INTERGENIC
SBS Chr9 3396806 C-T Hetero INTERGENIC
SBS Chr10 1289906 T-C Hetero INTERGENIC
SBS Chr10 7336413 C-T Hetero INTERGENIC
SBS Chr12 1268039 T-A Hetero INTERGENIC
SBS Chr12 12839419 T-A Hetero INTERGENIC
SBS Chr12 19617530 G-T Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 42937 42953 16
Deletion Chr7 4561692 4561701 9
Deletion Chr8 5595096 5595102 6
Deletion Chr12 6386284 6386288 4
Deletion Chr5 11746849 11746853 4
Deletion Chr3 14400947 14400951 4
Deletion Chr4 17284130 17284132 2
Deletion Chr2 19438715 19438718 3
Deletion Chr2 22074356 22074360 4
Deletion Chr7 23022205 23022212 7
Deletion Chr4 23136196 23136197 1
Deletion Chr8 28217337 28217338 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10173351 10173354 2
Insertion Chr7 23426614 23426617 2
Insertion Chr4 18215924 18215926 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 23133083 23282883 OsKitaake01g220500
Inversion Chr1 23133096 23282890 OsKitaake01g220500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 17447340 Chr1 18624463 2
Translocation Chr2 17447389 Chr1 18631766 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10115870	C-T	Hetero	INTERGENIC
SBS	Chr1	12166171	G-T	Hetero	INTERGENIC
SBS	Chr1	23869398	C-A	Hetero	INTERGENIC
SBS	Chr1	23869399	C-T	Hetero	INTERGENIC
SBS	Chr1	27972823	C-A	Hetero	INTERGENIC
SBS	Chr2	21806726	A-G	Hetero	INTERGENIC
SBS	Chr2	23021775	C-A	Hetero	INTERGENIC
SBS	Chr3	24094268	A-C	Homo	INTERGENIC
SBS	Chr4	2424903	C-T	Hetero	INTRON
SBS	Chr4	2424908	T-A	Hetero	INTRON
SBS	Chr4	36765370	C-A	Hetero	INTERGENIC
SBS	Chr7	10142694	A-C	Hetero	INTERGENIC
SBS	Chr8	1331471	G-A	Hetero	INTERGENIC
SBS	Chr9	3396805	C-T	Hetero	INTERGENIC
SBS	Chr9	3396806	C-T	Hetero	INTERGENIC
SBS	Chr10	1289906	T-C	Hetero	INTERGENIC
SBS	Chr10	7336413	C-T	Hetero	INTERGENIC
SBS	Chr12	1268039	T-A	Hetero	INTERGENIC
SBS	Chr12	12839419	T-A	Hetero	INTERGENIC
SBS	Chr12	19617530	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	42937	42953	16
Deletion	Chr7	4561692	4561701	9
Deletion	Chr8	5595096	5595102	6
Deletion	Chr12	6386284	6386288	4
Deletion	Chr5	11746849	11746853	4
Deletion	Chr3	14400947	14400951	4
Deletion	Chr4	17284130	17284132	2
Deletion	Chr2	19438715	19438718	3
Deletion	Chr2	22074356	22074360	4
Deletion	Chr7	23022205	23022212	7
Deletion	Chr4	23136196	23136197	1
Deletion	Chr8	28217337	28217338	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	23133083	23282883	OsKitaake01g220500
Inversion	Chr1	23133096	23282890	OsKitaake01g220500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes